G81120 (pcsk2)


Basic Information

Item Value
gene id G81120
gene name pcsk2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72483794 ~ 72508066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU89619
TTTATTATGGTATTCTTTTTTAGGTGCACAGGCGTCAAAATTAATCACACGTTCCTTGTCTTGTTTATATAGAAACAGTTGCTTGtcacaaaaatataaacagaaaGAAGTATCACTGCTCTGATTGCAAGATATTCAACTTTAAGAATGACACAGAAAATCGTTTACAGTCACAAACTGTACAATAGTTGTTTTACCAGAGGTGGAGGGGCGGGGAAATGCAATAACACCATATAGTGGATATATTCTGTTTATATACATTTTAGTAAAGTGTAAAAAACATAGACAGAAAGCAAGATGGGATCTTTTAGTTTTCTCTATAGAACAGATTATTTGAAGGTTACACTTTTATCATAATCGGATTACAAGAAACATCTATCGAAAGTGGAGGGCTAATataaacacagaaaaacaaaaagcagagaaaagggagggaggggagagaaggagagaaagtcaatgagagaggagagaaaggagggaggagagaaagtgtgagagagggcaagagagggagagaaagttatttggtgagagaaagggaaagtgagagaatgggaaagtgagagaaaaataggagagaagagagagggggagtgagagaaagataggagagatgagagagggggagtgagagaaagaaatagagagagagagagtggcccgGCATGCTGACCTGACCAGACGGTGTTTAGTTAGCTACGTCAGCTAGTTTTTACTCAGCAGGCTCTTCAGGCTCCTCTCCACCGCCTCGTCCAGCTCTTCCTCCAACTCCTCCTTTTTGGACATGGCTAATTTAGACTGGTAGTCACGCACTATCTGGTCTATGTAAGGAGCACTTTGTGTTCCATGCAGCATGAGGGTCCACTCCTTCAGGACACCCCTCTGTGGCTCGTTTCCCTGGAAGCCCACCTCCAGGACCCAGGTCCCGCGGGGGTCCTCTCCCCAGGTTTGGGTAGTCATGAAGGGCCACTTGTCGAAGCCCACCTTGGCATCGTCGTCCCGGGGCCGGCGGCTTAGTAGGATGGACTTGGTGCCCATGGGGGAGGTCATGTTGATGTTGAGGTCACCACGGCGACTGCCATTGACGGTGATCACGGCCTGAACATGCTCCAGGTAGCGGACAAAGTTGTCCTTCCCCTGGCAGGAGTCAGTGGAGATGGCCAGGATCAGCTTGTCACCCGACTGGATCtGGACATCCTGCAATGATCCAGCCACGCAGTGAAAACGCTCAGGGACGGTCTTCCACTCCTTGGCCATCTTGACCATGCCGCCAGCATCCAGCACACCGTAACCAAACAGGTGGTTGAACTCCAGGCCCACGCCGTTCCTCCGCCACTGGTGCACctcatcatgaagctggttccTCTTGGAGGTCAGCACAGACAGGTGCTGCATGTCCCTCCATGTCAGGTTGGGGCTgtggggtgaggaggggagagggagggagggagggagaggagag

Function

symbol description
pcsk2 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in peptide hormone processing. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space; membrane; and neuron projection. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in myocardial infarction and type 2 diabetes mellitus. Orthologous to human PCSK2 (proprotein convertase subtilisin/kexin type 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89619 True 1465 lncRNA 0.49 2 72483794 72508066

Neighbor

gene id symbol gene type direction distance location
LOC110528856 gtpbp2 coding downstream 128013 72330335 ~ 72355781 (-)
LOC118965494 LOC106576993 coding downstream 202550 72276698 ~ 72281244 (-)
LOC110528758 NA coding downstream 214260 72260084 ~ 72269534 (-)
LOC110528794 LOC106576993 coding downstream 231878 72202814 ~ 72251918 (-)
LOC110528822 clm1 coding downstream 290021 72176415 ~ 72193773 (-)
LOC110532653 bfsp1 coding upstream 892 72508958 ~ 72525721 (-)
LOC110532660 LOC107688027 coding upstream 98669 72606735 ~ 72607622 (-)
plek LOC106577000 coding upstream 104120 72612186 ~ 72618218 (-)
LOC110528940 LOC106577088 coding upstream 626587 73134648 ~ 73136850 (-)
LOC110528926 LOC106577002 coding upstream 632398 73140464 ~ 73290110 (-)
G81119 NA non-coding downstream 25152 72453408 ~ 72458642 (-)
G81095 NA non-coding downstream 55488 72427995 ~ 72428306 (-)
G80975 NA non-coding downstream 219014 72204507 ~ 72264780 (-)
G80934 LOC106576990 non-coding downstream 330901 72150787 ~ 72152893 (-)
G81275 NA non-coding upstream 208463 72716529 ~ 72759729 (-)
G81277 NA non-coding upstream 209420 72717486 ~ 72718244 (-)
G81524 NA non-coding upstream 583467 73091533 ~ 73091739 (-)
G81530 NA non-coding upstream 586376 73094442 ~ 73094714 (-)
G81565 NA non-coding upstream 610783 73118849 ~ 73119103 (-)
G80957 NA other downstream 272705 72207929 ~ 72211089 (-)
G79904 NA other downstream 739985 71743045 ~ 71743809 (-)
G79700 NA other downstream 1013335 71469435 ~ 71470755 (-)
G79616 NA other downstream 1097271 71321950 ~ 71386523 (-)
G83429 NA other upstream 2064381 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 2464146 74971772 ~ 74975108 (-)
G84713 NA other upstream 3020277 75528343 ~ 75528903 (-)
G85866 NA other upstream 3825402 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 3859227 76324531 ~ 76399997 (-)

Expression


Co-expression Network