G82111 (LOC106577091)


Basic Information

Item Value
gene id G82111
gene name LOC106577091
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73551616 ~ 73571737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU90667
GACACTCATTTGCTCTTGAAACTCAGAGACGACAAGATGGCTTTCTCTTGTCCAACTAAGAGAATGGCTCAGACCTCCTTGAAAATTAGGCTGCAGGGTTTGGAATGCCACTTCACCTGGAAGCTGGACGACAGCAGATCTAAACTGGAAAGTCTCAGACATACCCTGATAGATATCATCAGCAGCGAGGGGGTTCTCTGTTCCTGGACGGGTCATCTGTACAACCTCCTGGCTTACCTACACCACGCTTTGGGCTCCACAGAGGACGCTCTTCAATGCCTGAAGAAGGCTGAAGAGGCCATTCGCCTAAACAGCCCAGACGACGTGGAGCTAAGTCTGGTGGTCCACTATGGGAACTTGGCCTGGGTGCACTATCACCAAGGGGAGCTGACAGAGAGCCAGACCTATGTGGAGAAGGTGGGGAGACTACTGCGGGACAACCCCTCACCCTGCCCAGGTGTAGTGTGGGGAGAAAGGGCCTGGACTTTGAATAAGTTTGATGTAAGCAAG
>TU90669
ATCTAATCAGACACTAATTTTCTTTGTCGTGAAACAGACACTCATTTTCTTTGTCGAGACCACAAGATGGCTTTCTCTTGCCCAACTACGAAAATGGCTCAGACCTCCTTGAAAATTAGGCTGCAGGGTTTGGAATGCCACTTCACCTGGAAGCTGGACGACAACAGATCTAAACTTCAAAGCCTCAGAGAATCCATGATTGACATCAGCAGCAGCGAGGGGGTTCTCTGTTCCTGGACGGGTCATCTGTACAACTTCCTGGCTTACCTACACCACGCTTTGGGCTCCACAGAGGACGCTCTTCAATGCCTGAAGAAGGCTGAAGAGGCCATTCACCTAAACAGCCCAGACGACGTGGAGCTAAGTCTGGTGGTCCACTATGGGAACTTGGCCTGGGTGCACTATCACCAAGGGGAGCTGACAGAGAGCCAGACCTATGTGGAGAAGGTGGGGAGACTACTGCGGGACAACCCCTCACCCTGCCCAGGTGTAGTGTGGGGAGAAAGGGCCTGGACTTTGAATAAGTTTGATGTAAGCAAG

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90667 False 510 TUCP 0.51 3 73551616 73571737
TU90669 True 540 TUCP 0.36 2 73571066 73571737

Neighbor

gene id symbol gene type direction distance location
LOC110529004 LOC106577010 coding upstream 66468 73478288 ~ 73485148 (+)
LOC110528986 LOC106577009 coding upstream 101161 73433053 ~ 73450455 (+)
LOC110528975 LOC106577008 coding upstream 133174 73400847 ~ 73418442 (+)
LOC110528965 LOC106577007 coding upstream 152621 73386028 ~ 73398995 (+)
LOC110528891 LOC106577001 coding upstream 467780 72816192 ~ 73083836 (+)
LOC110529036 itprip coding downstream 8434 73580171 ~ 73589533 (+)
cfap43 cfap43 coding downstream 28446 73600183 ~ 73637760 (+)
LOC110529046 LOC106577092 coding downstream 37272 73609009 ~ 73611011 (+)
col17a1b col17a1 coding downstream 76206 73647943 ~ 73674938 (+)
LOC110529112 sh3pxd2a coding downstream 143484 73715221 ~ 73810555 (+)
G82105 NA non-coding upstream 5341 73546001 ~ 73546275 (+)
G82064 NA non-coding upstream 51667 73499646 ~ 73499949 (+)
G81807 NA non-coding upstream 93128 73458175 ~ 73458488 (+)
G81805 NA non-coding upstream 94939 73456461 ~ 73456677 (+)
G81804 NA non-coding upstream 95236 73455926 ~ 73456380 (+)
G82241 NA non-coding downstream 103355 73675092 ~ 73675396 (+)
G82564 NA non-coding downstream 596201 74167938 ~ 74168176 (+)
G82568 spf30 non-coding downstream 613851 74185588 ~ 74189683 (+)
G82575 NA non-coding downstream 621681 74193418 ~ 74193623 (+)
ccdc85a ccdc85a other upstream 2475514 71036440 ~ 71076239 (+)
G78121 NA other upstream 2896655 70571665 ~ 70654961 (+)
G75747 NA other upstream 5176687 68374505 ~ 68374929 (+)
G74139 NA other upstream 6766647 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 6792632 66756207 ~ 66758984 (+)
G83836 NA other downstream 1337488 74909225 ~ 74909806 (+)
G83829 NA other downstream 1540923 75112660 ~ 75114190 (+)
G83979 NA other downstream 1573127 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2886387 76457821 ~ 76459823 (+)
G86019 NA other downstream 3060008 76631745 ~ 76635936 (+)

Expression


Co-expression Network