G82165 (LOC106577091)


Basic Information

Item Value
gene id G82165
gene name LOC106577091
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 73551798 ~ 73610100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU90732
GGTCAATGCTTGAATCATGAGAGATGTATTCTTTTAAAAAATCTAGCAAGATTCCAAATCCACCAAAGCAGTCCAAAGCCTTCTCTGTCACTTCCTTTGCAAGTTTACATGCTTCCTCAACCTGGCCACTCTCTGCAAGCCTCTGCAGGTACATCACTGTGATGTACAAATCTTCTGGATCCAATTCTCTAGCAATCCGTAGGTGCTCCAACATCTCAGATCGCAGCTTCGGGgtaatgtttttattttcaaCAGATTTATTAAACGCCATGGCGTAGCCGCAGCGCAGCACCTTGTTCTGAGGGTCCCCCTTTAAGGCCTTCCGGAAGCAATCTAGTGCTTCTGCTTTCTTGCTTACATCAAACTTATTCAAAGTCCAGGCCCTTTCTCCCCACACTACACCTGGGCAGGGTGAGGGGTTGTCCCGCAGTAGTCTCCCCACCTTCTCCACATAGGTCTGGCTCTCTGTCAGCTCCCCTTGGTGATAGTGCACCCAGGCCAAGTTCCCATAGTGGACCACCAGACTTAGCTCCACGTCGTCTGGGCTGTTTAGGCGAATGGCCTCTTCAGCCTTCTTCAGGCATTGAAGAGCGTCCTCTGTGGAGCCCAAAGCGTGGTGTAGGTAAGCCAGGAGGTTGTACAGATGACCCGTCCAGGAACAGAGAACCCCCTCGCTGCTGATGATATCTATCAGGGTATGTCTGAGACTTTCCAGTTTAGATCTGCTGTCGTCCAGCTTCCAGGTGAAGTGGCATTCCAAACCCTGCAGCCTAATTTTCAAGGAGGTCTGAGCCATTCTGGTTTAAAAAAAGACA
>TU90731
GGTCAATGCTTGAATCATGAGAGATGTATTCTTTTAAAAAATCTAGCAAGATTCCAAATCCACCAAAGCAGTCCAAAGCCTTCTCTGTCACTTCCTTTGCAAGTTTACATGCTTCCTCAACCTGGCCACTCTCTGCAAGCCTCTGCAGGTACATCACTGTGATGTACAAATCTTCTGGATCCAATTCTCTAGCAATCCGTAGGTGCTCCAACATCTCAGATCGCAGCTTCGGGgtaatgtttttattttcaaCAGATTTATTAAACGCCATGGCGTAGCCGCAGCGCAGCACCTTGTTCTGAGGGTCCCCCTTTAAGGCCTTCCGGAAGCAATCTAGTGCTTCTGCTTTCTTGCTTACATCAAACTTATTCAAAGTCCAGGCCCTTTCTCCCCACACTACACCTGGGCAGGGTGAGGGGTTGTCCCGCAGTAGTCTCCCCACCTTCTCCACATAGGTCTGGCTCTCTGTCAGCTCCCCTTGGTGATAGTGCACCCAGGCCAAGTTCCCATAGTGGACCACCAGACTTAGCTCCACGTCGTCTGGGCTGTTTAGGTGAATGGCCTCTTCAGCCTTCTTCAGGCATTGAAGAGCGTCCTCTGTGGAGCCCAAAGCGTGGTGTAGGTAAGCCAGGAAGTTGTACAGATGACCCGTCCAGGAACAGAGAACCCCCTCGCTGCTGCTGATGTCAATCATGGATTCTCTGAGGCTTTGAAGTTTAGATCTGTTGTCGTCCAGCTTCCAGGTGAAGTGGCATTCCAAACCCTGCAGCCTAATTTTCAAGGAGGTCTGAGCCATTCTGGTTTAAAAAAAGACAGCAGTTCAATCAAAATAGTTTAGAACTAACAATACTTAAGGGAAATATTTCAGACATGGATGATGAACCAATTACTTGTTGtttatgtgtgagtgagagagagagatcacttaCTTCGTAGTTGGGCAAGAGAAAGCCATCTTGTGGTCTCGACAAAGAAAATGAGTGTCTGTTTCACGACAAAGAAAATTAGTGTCTGATTAGATACCTCACTGACTATCCTGATTTTATACTGTATGGACCAAATTGTTATCTTCCAATGGGAGGGTTATGTGGTTATTGTCA

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90732 False 815 lncRNA 0.49 3 73551798 73610100
TU90731 True 1100 lncRNA 0.39 2 73570987 73610100

Neighbor

gene id symbol gene type direction distance location
LOC110529015 LOC106577089 coding downstream 2845 73547098 ~ 73548953 (-)
LOC110528949 LOC106577006 coding downstream 178061 73323452 ~ 73373737 (-)
LOC110528926 LOC106577002 coding downstream 261688 73140464 ~ 73290110 (-)
LOC110528940 LOC106577088 coding downstream 414948 73134648 ~ 73136850 (-)
plek LOC106577000 coding downstream 933580 72612186 ~ 72618218 (-)
sfr1 sfr1 coding upstream 27535 73637635 ~ 73639525 (-)
slka slk coding upstream 65558 73675658 ~ 73711294 (-)
LOC110529113 neurl1 coding upstream 216324 73826424 ~ 73886957 (-)
LOC110529136 LOC106608714 coding upstream 401891 74011991 ~ 74062308 (-)
LOC110529148 NA coding upstream 472839 74081285 ~ 74085971 (-)
G82039 NA non-coding downstream 62695 73482607 ~ 73489103 (-)
G82038 NA non-coding downstream 64912 73459791 ~ 73486886 (-)
G82035 NA non-coding downstream 93717 73457768 ~ 73458081 (-)
G82033 NA non-coding downstream 95548 73456003 ~ 73456250 (-)
G82213 NA non-coding upstream 11238 73621338 ~ 73621803 (-)
G82217 cfap43 non-coding upstream 16258 73626358 ~ 73626719 (-)
G82234 NA non-coding upstream 35416 73645516 ~ 73645939 (-)
G82605 NA non-coding upstream 61984 73672084 ~ 73674931 (-)
G82608 NA non-coding upstream 64987 73675087 ~ 73675418 (-)
LOC110528794 LOC106576993 other downstream 1299880 72202814 ~ 72251918 (-)
G80957 NA other downstream 1340709 72207929 ~ 72211089 (-)
G79904 NA other downstream 1807989 71743045 ~ 71743809 (-)
G79700 NA other downstream 2081339 71469435 ~ 71470755 (-)
G79616 NA other downstream 2165275 71321950 ~ 71386523 (-)
G83429 NA other upstream 962347 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 1362112 74971772 ~ 74975108 (-)
G84713 NA other upstream 1918243 75528343 ~ 75528903 (-)
G85866 NA other upstream 2723368 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 2757193 76324531 ~ 76399997 (-)

Expression


Co-expression Network