G82568 (spf30)


Basic Information

Item Value
gene id G82568
gene name spf30
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74185588 ~ 74189683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU91164
CGGGGCCTGGCTTTTCTAGTGCTAAGTTGTGTGTGTAAAGTAGATGAACATGTGTTACCTGTCCTTTCTTGTTCTTGTTGTAGGCCTTGTTGTTGAAACTTTGCCACTTGGATTTCTGGTCTTCTCGCTCCTGTTCCAGCTCCTTCATCCTCAGCACCTTCTTCTGGGCCTTCTTCTTCTTGTACTCCCTCTGGTCTGCTATCTGCTCTTTCCTGTCATGGCCTGGACTTGGGTTTCCCGTCCTCCTCAGAATGCTTGCCCTCCTCGGCAGGTTTGAGGTTCTGCAGTGGCACCACCTCTGCGTTCCCGTAGCCGAAGAAGGTAATGGCCGCCGTGCCGTTCTCGCCGTCTATCTCCTCAATCTCAGCCTCATACACCTGTCCATCCTGACTCCACACAGTCATACACCTGTCCCCAACGCTCCAGCTGTGTTTCAAGGGGGCTGCATCAGAGCTGTTGGCACTAGCAGTACCTTCAGAGGGCTGCGACGTCAGGAGGTCTTTTGTCAAGTCTATGACTTCCGATAAGTCTTTCTGTAATTTGAGAAGGTCTTCGTTCTCAGGATCGGTTGATAAGGCGGCTTCCACTTGTTGTAACTGGGCTTTGTAGCTGCCCAACTGTTTCAACAAATCTTCTGACATCTTCTCGTATTTGCTTCAAATTAATAGACTCAGGATATTCAGATTTCACTTAAATTGTTTCTAATAACTCAAATCGTAGACGACAACAACAAAACAGTTCCTTTCCTCCTCAG

Function

symbol description
spf30 Predicted to enable RNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome. Part of precatalytic spliceosome. Orthologous to human SMNDC1 (survival motor neuron domain containing 1).

NR:

description
Survival of motor neuron-related-splicing factor 30

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91164 True 754 lncRNA 0.48 5 74185588 74189683

Neighbor

gene id symbol gene type direction distance location
LOC110529185 mxi1 coding upstream 1889 74171733 ~ 74183699 (+)
LOC110529161 add3 coding upstream 25317 74111112 ~ 74160271 (+)
LOC110529121 LOC106577020 coding upstream 177484 73952690 ~ 74008104 (+)
LOC118964464 NA coding upstream 242014 73943018 ~ 73943574 (+)
LOC110529112 sh3pxd2a coding upstream 375033 73715221 ~ 73810555 (+)
LOC110529196 LOC106577022 coding downstream 377 74190060 ~ 74192420 (+)
bnip3 bnip3 coding downstream 29287 74218970 ~ 74226765 (+)
ebf3a LOC106577027 coding downstream 78997 74268680 ~ 74342595 (+)
LOC118966714 NA coding downstream 466873 74656556 ~ 74656864 (+)
insyn2a fam196a coding downstream 492351 74682034 ~ 74709286 (+)
G82564 NA non-coding upstream 17412 74167938 ~ 74168176 (+)
G82241 NA non-coding upstream 510192 73675092 ~ 73675396 (+)
col17a1b col17a1 non-coding upstream 510650 73647943 ~ 73674938 (+)
G82105 NA non-coding upstream 639313 73546001 ~ 73546275 (+)
G82064 NA non-coding upstream 685639 73499646 ~ 73499949 (+)
G82575 NA non-coding downstream 3735 74193418 ~ 74193623 (+)
G82535 NA non-coding downstream 38220 74227903 ~ 74229003 (+)
G82975 NA non-coding downstream 46554 74236237 ~ 74236439 (+)
G82981 NA non-coding downstream 49777 74239460 ~ 74239703 (+)
G83019 NA non-coding downstream 77529 74267212 ~ 74267418 (+)
G82111 LOC106577091 other upstream 613851 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 3109486 71036440 ~ 71076239 (+)
G78121 NA other upstream 3530627 70571665 ~ 70654961 (+)
G75747 NA other upstream 5810659 68374505 ~ 68374929 (+)
G74139 NA other upstream 7400619 66784335 ~ 66784969 (+)
G83836 NA other downstream 719542 74909225 ~ 74909806 (+)
G83829 NA other downstream 922977 75112660 ~ 75114190 (+)
G83979 NA other downstream 955181 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2268441 76457821 ~ 76459823 (+)
G86019 NA other downstream 2442062 76631745 ~ 76635936 (+)

Expression


Co-expression Network