XLOC_020300


Basic Information

Item Value
gene id XLOC_020300
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 15358159 ~ 15360184 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042105
ATACATTTAAGGACATTTTCATTCTGGAAGTGAACCAATTCTTTAACTGCATTGGTAATCTGGGATTTGAGCTTGGATGTAAGACAAGTTAAAGAAAAACTGGTAAAACTGTCCCAAGCACGGCCATATTGCCTGAATATAAAATGCTTATTTCAGGGGAAACACTTGAAGGTTAAATTGCATTTGGTTTAATCATCCCAATGCCATTTGCAGAATAGTCACAAAGGTCTGTATTTGCATAGCGTCTATGCCTTAGTATCTGAAAACGCAAGAAAATAGGAATGAAATATTAAAGCTTTGCATTCAGTATGGGCACAGAAAAGCGCATAAATACATCAGATATAATCTAAAATCTTTCCTTATGCAGACCTATTGTAGATTCATGAAATAGACTTTCCTGACATTTCTTCACCGAGTTTAGATTTCCAAGAGGCTAATTTATTTAAAGGTGAAGGTGTGTGCAATTTCTGCATCACTGACGGCATGAAACAGACTTGGCAAAAACTAGACTTGGAGAAAATGTGTACGGTGCTCGCCTATGAAAACCTCACAAGTTTGATACTTATGAAGTTTTAaatggttgctatgtggttgctaaggtgttctaaatAGTTTTTATGTTTGCTCAGATTCAGGGCAAGGatgttttgggtggttgctatgAGTAGTTTCTAGTAGGTTCTGATGGTTGCTAGGTGTACTTTCTATAATGTTctagGTGGTTATTAATAACTAggggttgctaggttgttctgggTTGTTATTTGTGAAATTTTAAGGTAGTTTGTACAGTTTCTTTGAGGTTTCAAGTGTTGAATTCAGTGCTTTGGTGTTTTGGGTGGTGACAAGGAATGGTTTCTAGGATGTAATgatagttgctagggtatttgTGCAGTTTCTAGGATGTCAGTCTTTAGGTGATTGATGTCATGCAAGACTTGGATGATTTGGGTGCTGCTGACTGGGAGTGGTTTTGAGGGTGTTgtaatggttgctagggtattttatGCAGGTTTGTAGGATGTTCTAGGTGGTTTTAGCCCTCTTTAGAGCTTGGATGTAGTTGCTAGAGATTCTAGGGTGTCAGTTTCTATGTGATTGTTGCCATGCAAGACTTGGGTGATTTGCATGGTGACTGGGAATCGTTTCTAGGGTGTTTTGACGGTTGCtatattattttatgcattgCTGGCTTGTCAAATTATGTAGTTTCTTGAAGGTTTTCTATACGTTTCTAACAGGTTCTGACTGATTTCCAGGCAGATGTTGATTTGCAAGACTATGTTTTTTGGGGTGGTTGCTCGGTATTGTTTCAGGATGTTTTATTACATGTTCTGGGTGGTCTCTAATTCAGTATTTTGAATAATTACTGGGATGTTAAGAGACAATCTTACATGCAGACACAATGACATATGTTTGTGGCATATCTGACTTAAATCCTATTAGTTGTTTGCattcaaaactgaaaaaaaaaaaaacatttatttttgctatgaaAATCAAAAGCATGTTTTTATTGGACATTTACAAACTGTAACTTCAAAGGTATTTCTATTTTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042105 True 1561 lncRNA 0.37 2 15358159 15360184

Neighbor

gene id symbol gene type direction distance location
XLOC_020299 rrp36 coding upstream 5613 15343953 ~ 15352546 (+)
XLOC_020298 sult3st2 coding upstream 15994 15336752 ~ 15342165 (+)
XLOC_020297 sult3st4 coding upstream 21778 15331214 ~ 15336381 (+)
XLOC_020296 sult3st5 coding upstream 30350 15323930 ~ 15327809 (+)
XLOC_020295 sult3st3 coding upstream 39879 15315655 ~ 15318280 (+)
XLOC_020301 gpc5b coding downstream 78329 15438513 ~ 15501417 (+)
XLOC_020302 gpc1a coding downstream 147034 15507218 ~ 15548201 (+)
XLOC_020303 lpl coding downstream 264187 15624371 ~ 15630421 (+)
XLOC_020304 CABZ01090041.1 coding downstream 272829 15633013 ~ 15643059 (+)
XLOC_020305 fam32a coding downstream 360197 15720381 ~ 15721823 (+)
XLOC_020293 NA non-coding upstream 256733 15099470 ~ 15101426 (+)
XLOC_020292 NA non-coding upstream 292207 15058189 ~ 15065952 (+)
XLOC_020291 NA non-coding upstream 347471 14991684 ~ 15010688 (+)
XLOC_020290 NA non-coding upstream 476733 14879864 ~ 14881426 (+)
XLOC_020288 CU137716.1 non-coding upstream 863788 14489758 ~ 14494371 (+)
XLOC_020306 BX323550.1 non-coding downstream 372783 15732967 ~ 15734843 (+)
XLOC_020308 BX323550.5 non-coding downstream 427797 15787981 ~ 15937268 (+)
XLOC_020313 CR751228.1 non-coding downstream 917314 16277498 ~ 16277625 (+)
XLOC_020322 BX322568.1 non-coding downstream 1279126 16639310 ~ 16639425 (+)
XLOC_020324 NA non-coding downstream 1450100 16810284 ~ 16811361 (+)

Expression


Co-expression Network