XLOC_020302 (gpc1a)


Basic Information

Item Value
gene id XLOC_020302
gene name gpc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 15507218 ~ 15548201 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040307
CTCCCCAGCCTCTGGATCCGGGACACAATGGATCTGACAGCGGTCGCGCTGCTCGTGTCGCTCGTGTCCGTGTCTCTGTCCGCGGAGAACGCGGGTGGTAAAGCGCGGAGCTGCACGGACGTGCGCCAGTTCTACAGCGGCAAAGGCTTCACGTTAAACGGCGTCCCGCAGTCGGAGATCTCAGGAGAGCATCTCCGCATCTGCCCGCAAGGTTACACCTGCTGCACCAGTGCCATGGAGGAAACGCTGTCGAACCTGAGCCGCAGAGAATTTGAAGGCCTGGTCAGAGAAGCAGGACGATCCATTCAAGCTTTGCTCAATGCTCAGTACAGAACCTTTGACACATATTTCCTGGAACTCCTGAATGGCTCTGAACGGTGGTTAGAGGAGGCTTTTGTGGCTGCACTTGGAGAACTGTATCGACTGAATGCAGGAGTGTTTCGTGACCTCTATGCCGAACTGCATCGATATTACAGTGGTGCTTCCCTGAATCTCGAGGAGGCCTTGGATGAGTTCTGGATGAAGCTCCTGGAGCGACTTCTGAAGGCGTCTGACCCTGAAACTGCCTCCCTGCTCTCTGATGACTTCCTTGATTGTGCCTCCAAGCAGACCGAGACCCTGCGTCCTTTTGGAGATGCTCCACGGGAACTAAAGGCCAAGCTGGTGCGGGCATTCATTGCGGCTCGGGCATTTGTCCAGGGCCTTAACGCAGCTGGAGAGATTGTACGGAAGGTGTCTCAGGTCCCACTGAGCCCAGAGTGCAATCGTGCCATTATGAAACTGGTGTACTGCCCTCATTGCAGAGGTCTGGGATCAGTCAAACCTTGCATCAACTACTGCAAAAATGTGATGAAGGGCTGCCTGGCTAATCAGGCTGACCTGGACACTGAGTGGCAGAGCCTCATAGAAACCATGCTACAGGTGGCCTCCAGTTTTGGTGCCGAGCCCAGTATGGACACGGTGATCTATTCAATTCCTGTGAGAATCTCTGAAGCTGTCCTCGCCATGCAGGAGAACATGGAGATCTATACCAGCAAGGTTTTTAAGGCCTGTGGGGACCGTGGTGAGGAAGGCACACCAAGTTCAATATCTGAGGAGCCAAAAAAGAAAGAACGCACAGTGACTGCTCTGGAATACAAACCCAGCCCTAAGTCTGCAGCCAGACTGGAGGTccagGTCACGGATGTGTACAGCAAACTCAAGGAAATGCAGCTTTACTGGATCCAACTTCCTTCGGCTTTGTGCAGTGGTAAAACGGCATCTTCAACCACTGGTGACAAATGCTGGAATGGCATCACCAAAGCCAGttacCTCCCAGAGGTCATGGGTGATGGGCTGGCCAATCAGATTAATAACCCAGAGGTGGAGATCGACATCACTAAGCCTGACAGGACTATACGTCAACAGATCATGCTGCTGAAGATCATGTCTAACCGCCTGAAAAACGCCCTCGAAGGCAATGATGTGGATTTCCAAGATACAAGTGATGATTTCAGTGGCTCGGGAAGCGGCATGTGTGCGGATCACCTGTGTGTTCGTGGTCGACCTCCGGTTTTTGGGCCGAAAACGGACAGGCCCAAACTCTATGCCACTGGGCCTGAAAACAAAAGAGTCAAAGGATCCGGGAACCAGATTCAGCCTTCTTTCATTTTACTGATTGTGTTCTTTGTGAGTCTATTGCTCAGACGATAATGGAGATGCTAAA

Function

symbol description
gpc1a Predicted to enable fibroblast growth factor binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in collagen-containing extracellular matrix; extracellular space; and plasma membrane. Predicted to be anchored component of plasma membrane and integral component of membrane. Predicted to be active in cell surface and synapse. Is expressed in digestive system and nervous system. Orthologous to human GPC1 (glypican 1).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0061009 common bile duct development biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:1905475 regulation of protein localization to membrane biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017134 fibroblast growth factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-147 Predicted to enable fibroblast growth factor binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in collagen-containing extracellular matrix; extracellular space; and plasma membrane. Predicted to be anchored component of plasma membrane and integral component of membrane. Predicted to be active in cell surface and synapse. Is expressed in digestive system and nervous system. Orthologous to human GPC1 (glypican 1).

Ensembl:

ensembl_id ENSDARG00000019341

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040307 True 1705 mRNA 0.52 9 15507218 15548201

Neighbor

gene id symbol gene type direction distance location
XLOC_020301 gpc5b coding upstream 5801 15438513 ~ 15501417 (+)
XLOC_020300 NA coding upstream 147034 15358159 ~ 15360184 (+)
XLOC_020299 rrp36 coding upstream 154672 15343953 ~ 15352546 (+)
XLOC_020298 sult3st2 coding upstream 165053 15336752 ~ 15342165 (+)
XLOC_020297 sult3st4 coding upstream 170837 15331214 ~ 15336381 (+)
XLOC_020303 lpl coding downstream 76170 15624371 ~ 15630421 (+)
XLOC_020304 CABZ01090041.1 coding downstream 84812 15633013 ~ 15643059 (+)
XLOC_020305 fam32a coding downstream 172180 15720381 ~ 15721823 (+)
XLOC_020306 BX323550.1 coding downstream 184766 15732967 ~ 15734843 (+)
XLOC_020307 si:dkeyp-70f9.7 coding downstream 199136 15747337 ~ 15748440 (+)
XLOC_020293 NA non-coding upstream 405792 15099470 ~ 15101426 (+)
XLOC_020292 NA non-coding upstream 441266 15058189 ~ 15065952 (+)
XLOC_020291 NA non-coding upstream 496530 14991684 ~ 15010688 (+)
XLOC_020290 NA non-coding upstream 625792 14879864 ~ 14881426 (+)
XLOC_020308 BX323550.5 non-coding downstream 239780 15787981 ~ 15937268 (+)
XLOC_020313 CR751228.1 non-coding downstream 729297 16277498 ~ 16277625 (+)
XLOC_020322 BX322568.1 non-coding downstream 1091109 16639310 ~ 16639425 (+)
XLOC_020324 NA non-coding downstream 1262083 16810284 ~ 16811361 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_00873074_00886771 GPC1A coding CI01000030 null 871944 ~ 886807 (+)