G83074


Basic Information

Item Value
gene id G83074
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74358150 ~ 74359685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU91694
AGTCTCAACCGCTTTTAATGGTGTCCATAATTCCATTATAATTCCATTGAATCACATGGCCAGGATGATACTGAAACAGAGTACTTGCACATGCATGATACTAATAAGTTATCAAAGTGCATAACGCATTTCTCTCTGATCCCTGAACTGTATCGGCCAAACTACTCACACATCTGCTAATCTGTCAGCCTGTCTCTCTGACTAAATACATAGAACGTATCGTTTACCTTTTACTCCCTCTGTTGTGTGGTGTAGCCTATTACATAGACTTGACTTAGCCACAAGCAAAGAGGGCGCTTACAGTGCACTTCAGAGTGTGCTCCTTTTAAATATGATCCCCTGGTGGCTCTGTCACAGCAGCCTTGGTTACGGGCTGACTGTAGCCTGTAGCCACCACAGGCATCATTAGTCCTGTGTGAAACCACACACTGAAATGCATTCTTCATCTGACAGTGTACAGCCTTCTGCCTGCCTGCTTCAACATCGAGGCTGGAATTGTGCTCTGATGGCACAGTGCTGTAAGTGAGTCCAACAGTACAGCAGAGACGCATTCAAAGATGCTTCAAAATGTACTACAGTTCAGTAGACATTGATTCATCTTTGCAAAAATAGAATAGCAGAAATGATATAATGCATAGATTAAAATGACAGTCAATCTAATCCTCACAGAAAAATGTCCATGCACTCTTTACAAGGCTGCTTTCATATACCTCGCTGTCAggaaaaatatttaatttatCTCAATGGCATCAAATTGGAAATTGATCCCATTGTTCAACTGAAGAATTGAAAGCTGCGTTTGTATGCCTGTTTCCCGTTCTACACTGCCCTCTAATGGAAATCATCATTTTTACAAGAAAGAAGCTCTAAAATTATTCTCTGAATGGTGCTTCAAATTTCAGCCATATTTGAGATGGCTAACTGAACACAATAACATCTATTGCAAACTATATCTCCAGTTTGTTCCGGTATAACTACAACATTTAAAATAATTAAGTGACTGGTTATTCAAGATGAAGCTTTTTaaactttaaatgtatttatgaaaaataaaaatacatttcaacaCTGTCGTTGAAGGTGAATCTTAAATGAAGAAAAACTAATGACTCACAAACAATTTCAAGCCTTTTTCCTGGATGTTGAACAAAGCATTCACTTGGCAGGAAATACAATAACCAATGAAAGGTACAAAGAGTGATTTAGCATAGGGAGGAAAACGATTCAAGTGACATATTTTTGGGGAAATAATTATTTAGAGAAACCATTCCAACAATAACTGGCAACCCAAACTGGCACCCATGGGAACATATGTTTGTAATTCTTAATGTTCAATGTTAAAGTTATTTTAGTGCCTTCTAATTTCAGACCAACATTAACTATACAGTATGATTAGTAGAACATAAGACCAGTAGTATTGGCATACACATAGTT
>TU91695
AGTCTCAACCGCTTTTAATGGTGTCCATAATTCCATTATAATTCCATTGAATCACATGGCCAGGATGATACTGAAACAGAGTACTTGCACATGCATGATACTAATAAGTTATCAAAGTGCATAACGCATTTCTCTCTGATCCCTGAACTGTATCGGCCAAACTACTCACACATCTGCTAATCTGTCAGCCTGTCTCTCTGACTAAATACATAGAACGTATCGTTTACCTTTTACTCCCTCTGTTGTGTGGTGTAGCCTATTACATAGACTTGACTTAGCCACAAGCAAAGAGGGCGCTTACAGTGCACTTCAGAGTGTGCTCCTTTTAAATATGATCCCCTGGTGGCTCTGTCACAGCAGCCTTGGTTACGGGCTGACTGTAGCCTGTAGCCACCACAGGCATCATTAGTCCTGTGTGAAACCACACACTGAAATGCATTCTTCATCTGACAGTGTACAGCCTTCTGCCTGCCTGCTTCAACATCGAGGCTGGAATTGTGCTCTGATGGCACAGTGCTGTAAGTGAGTCCAACAGTACAGCAGAGACGCATTCAAAGATGCTTCAAAATGTACTACAGTTCAGTAGACATTGATTCATCTTTGCAAAAATAGAATAGCAGAAATGATATAATGCATAGATTAAAATGACAGTCAATCTAATCCTCACAGAAAAATGTCCATGCACTCTTTACAAGGCTGCTTTCATATACCTCGCTGTCAggaaaaatatttaatttatCTCAATGGCATCAAATTGGAAATTGATCCCATTGTTCAACTGAAGAATTGAAAGCTGCGTTTGTATGCCTGTTTCCCGTTCTACACTGCCCTCTAATGGAAATCATCATTTTTACAAGAAAGAAGCTCTAAAATTATTCTCTGAATGGTGCTTCAAATTTCAGCCATATTTGAGATGGCTAACTGAACACAATAACATCTATTGCAAA
>TU91696
AGTGATTTAGCATAGGGAGGAAAACGATTCAAGTGACATATTTTTGGGGAAATAATTATTTAGAGAAACCATTCCAACAATAACTGGCAACCCAAACTGGCACCCATGGGAACATATGTTTGTAATTCTTAATGTTCAATGTTAAAGTTATTTTAGTGCCTTCTAATTTCAGACCAACATTAACTATACAGTATGATTAGTAGAACATAAGACCAGTAGTATTGGCATACACATAGTTGTTCTTTATGGATGTGATTGTCCTGTCTTGTCCCACTGCAGTATAGTTAGAATCTATTTCACTGTGCTGCCGGAATGCAGAGAGCGTTGTTACTGCCGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91694 False 1434 lncRNA 0.37 1 74358150 74359583
TU91695 False 947 lncRNA 0.51 1 74358150 74359096
TU91696 True 340 lncRNA 0.37 1 74359346 74359685

Neighbor

gene id symbol gene type direction distance location
ebf3a LOC106577027 coding upstream 15555 74268680 ~ 74342595 (+)
bnip3 bnip3 coding upstream 131385 74218970 ~ 74226765 (+)
LOC110529196 LOC106577022 coding upstream 165730 74190060 ~ 74192420 (+)
LOC110529185 mxi1 coding upstream 174451 74171733 ~ 74183699 (+)
LOC110529161 add3 coding upstream 197879 74111112 ~ 74160271 (+)
LOC118966714 NA coding downstream 296871 74656556 ~ 74656864 (+)
insyn2a fam196a coding downstream 322349 74682034 ~ 74709286 (+)
c1h10orf90 cssa18h10orf90 coding downstream 432871 74792556 ~ 74812476 (+)
LOC110529328 adam12 coding downstream 458022 74817707 ~ 74965855 (+)
LOC110529343 LOC106577035 coding downstream 615550 74975235 ~ 74981532 (+)
G83070 NA non-coding upstream 5260 74352673 ~ 74352890 (+)
G83069 NA non-coding upstream 6203 74351711 ~ 74351947 (+)
G83019 NA non-coding upstream 90732 74267212 ~ 74267418 (+)
G82981 NA non-coding upstream 118447 74239460 ~ 74239703 (+)
G82975 NA non-coding upstream 121711 74236237 ~ 74236439 (+)
G83075 NA non-coding downstream 103 74359788 ~ 74360375 (+)
G83100 NA non-coding downstream 31323 74391008 ~ 74391301 (+)
G83237 NA non-coding downstream 68564 74428249 ~ 74428501 (+)
G83291 NA non-coding downstream 114404 74474089 ~ 74474336 (+)
G83297 NA non-coding downstream 120261 74479946 ~ 74482079 (+)
G82111 LOC106577091 other upstream 786413 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 3282048 71036440 ~ 71076239 (+)
G78121 NA other upstream 3703189 70571665 ~ 70654961 (+)
G75747 NA other upstream 5983221 68374505 ~ 68374929 (+)
G74139 NA other upstream 7573181 66784335 ~ 66784969 (+)
G83836 NA other downstream 549540 74909225 ~ 74909806 (+)
G83829 NA other downstream 752975 75112660 ~ 75114190 (+)
G83979 NA other downstream 785179 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 2098439 76457821 ~ 76459823 (+)
G86019 NA other downstream 2272060 76631745 ~ 76635936 (+)

Expression


Co-expression Network