G84015 (cssa18h10orf90)


Basic Information

Item Value
gene id G84015
gene name cssa18h10orf90
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 74798703 ~ 74799905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU92686
CCTCGCTATGGCATTGCGTACGCTGTTAAGACTTGGAAATGTGATTTTATCCACACAGCTATGGAAATGGGGAGCCATTGAAAGGAATGCTGCTGGATTTGCATGGGTACTTTAGAGTTTTGCCCTGACATGGGGAGATGAAATTCATACCTGGGCTGATATTAAAAGcagggtgtctgtgtgtggaatttcTCAGCCGACGACAGCACAGCTCATCTGCAATTCCATTGTGCTGACTGGCCCCGGAGTATGAGTCGCCTGTTCCTCTGGCTGATGAGAATAACCCTGAGGTAAGATTGTGTGCAGTTAAATCAGATGTTCTATTCTTAATACCATCAGTATCTGCCATTTTGGGGACCTCGTAGCCCCCTTTGATTGATGAAGAGCCTCTGCTGTAACCCACATCAGTCTCTGAGTTGTCCCTTCTATGGGTGCAGCTTAATGCCCCCATAGATCTCCGGAGGTCCTGAAGTGTTTTGGGGTAATCCATAGAGGTTCCAATGTGGGACGAGCCCCCAACATACAGAGACAGGGTGGACCTGTGCATAACCGGCTTTGTGACCTCTGGCTGTCTTATGGAGATAGACAGTGACTTGTCCAGATACAGAACTGTGTTCGCAGACCTCCAACGTACCTCAAGCTGGACGCATGAGCAGAAAGAGGGCTGGAGTGAGAAAGGCCTGAAGGTGCTTCCATTGTCCTTGAGACTGTCCTCACCTGTGTAACTGTGCCTGTGTTCAGGCCAGGCAGTCCTCATCCCTGGCCCTATCATCTGGACCTTGGCACATGCAGAGTAGCTCTGTCTGTACTCTGTCACCTTTACTATGGTGGCCTTGTGTCTGGTCACCACCTCAGAGTGCTTTGGAATGGCTGAGGATAGGACATGAGTCATGACTGGGTTGATGGATGTGGATGACCTGATAGGCAGGATCGGTTGGTGGGGATAATGTGATTGGTTGGCCCCTGACTGGGAGACCCTGCAGGATGCGATGGTGATGGAGGAGAAGCCCGTCTTTGGTCGGCCGCCCAGGACATTAGGGACACTGGCCATCCTCAGCAGGGTTGGACTCCCTCTGTGGGGTACATGTCCACCTCTCTGGGAGTCCCCAGAGTGTGTCGGCCTCATAAGGGATGGTGATGTGGAAGCCCTCTCCCCTTGTCCTCTCCACATGCTCCATGAGGGGGTAATATCCTTGGTGGAAG

Function

NR:

description
uncharacterized protein LOC110529316 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92686 True 1203 lncRNA 0.52 1 74798703 74799905

Neighbor

gene id symbol gene type direction distance location
LOC110529307 LOC106577031 coding downstream 69857 74709330 ~ 74728846 (-)
LOC110529277 ptpre coding downstream 267078 74479938 ~ 74531625 (-)
gnrh3 NA coding downstream 320425 74477119 ~ 74478278 (-)
mgmt mgmt coding downstream 420549 74348790 ~ 74378154 (-)
LOC110529206 ppp2r2d coding downstream 564586 74229248 ~ 74234117 (-)
fank1 fank1 coding upstream 171867 74971772 ~ 74975108 (-)
edrf1 LOC106577037 coding upstream 182351 74982256 ~ 74996768 (-)
LOC110529369 LOC100380861 coding upstream 312736 75112641 ~ 75133272 (-)
LOC110529412 LOC106577039 coding upstream 335174 75135010 ~ 75148790 (-)
LOC110522123 LOC106577094 coding upstream 545208 75345113 ~ 75348344 (-)
G83736 NA non-coding downstream 18164 74780317 ~ 74780539 (-)
G83718 LOC106581772 non-coding downstream 33645 74764604 ~ 74765058 (-)
G83674 NA non-coding downstream 63789 74734368 ~ 74734914 (-)
G83504 LOC106572245 non-coding downstream 177873 74620603 ~ 74620830 (-)
G83477 NA non-coding downstream 196598 74601883 ~ 74602105 (-)
G84020 NA non-coding upstream 11267 74811172 ~ 74812111 (-)
G84023 NA non-coding upstream 16490 74816395 ~ 74816890 (-)
G84085 NA non-coding upstream 109650 74909555 ~ 74909951 (-)
G84087 NA non-coding upstream 113557 74913462 ~ 74913706 (-)
G84092 NA non-coding upstream 120464 74920369 ~ 74920623 (-)
G83429 NA other downstream 225914 74572447 ~ 74572789 (-)
LOC110528794 LOC106576993 other downstream 2546785 72202814 ~ 72251918 (-)
G80957 NA other downstream 2587614 72207929 ~ 72211089 (-)
G79904 NA other downstream 3054894 71743045 ~ 71743809 (-)
G79700 NA other downstream 3328244 71469435 ~ 71470755 (-)
G84713 NA other upstream 728438 75528343 ~ 75528903 (-)
G85866 NA other upstream 1533563 76333468 ~ 76334136 (-)
ccser2a ccser2 other upstream 1567388 76324531 ~ 76399997 (-)
G86063 NA other upstream 1721180 76516251 ~ 76523481 (-)

Expression


Co-expression Network