XLOC_020308 (BX323550.5)


Basic Information

Item Value
gene id XLOC_020308
gene name BX323550.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 15787981 ~ 15937268 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040314
ATAGTTATGAAACCCCATTTAATAACAAAATGCATACACACATCTGGGTTTGCAAAAATCACAAAAGGCAAACTCTTAAACACTGCAAATTGATGTTCCCCGTGGAGCTTTGTCTCGGGATTagttttgcatgttttgtttacCAGATGTCTGGAATGCCGTCTTCCTCCTTATGCACCATAATCAATCTCAGACATCAAAAAAGATAAAATCATGTTGACATTGTGTAATCCAGTTAGCCTGTTTTTTTCACGATCCGTCCAGCAATGATGCTCGCTTTATTTTCCTCTCAAGTAGAAACTGAGGCTgccgaaaataaatgaatgctggGAATCGACACGTCGTGCACCTGTATGTCAGAGGCCTGTTAGTTCTTCCGTTACAGCAACAACACGAAGCCCCTCAACGTCCAGCGGCTCTCGGTGGGCATTTGACCCGCTACTATGAGTCTAACAGTAGGAATGAAGGGGCCAGAAAACGCTCTGTTTGTTTTTCCACATTCTACTTCGATCTGAAGCTGAGAATTCGCGTCAGTTTGATCTACACATGAGCTCTCGCTACGAGCGCCGAGAAACAACAGGACGCGGCGAGGCTCATTCAGCGCGTGTTTGACTTTCCCCTCAGAAAACCGCGCGCTTCAAAGAAACGCCGTACGACGAACGAGACTCAAAACACCTCACCTTACATCATTGAAATAACAAACTGACTTTTATTGAGCCCGAAAACTAATATTATTCCCTCAGCACAAACTGGTGACTGTATTATTGCGATTTTCAACCGAGAGAAGAGATGGACATACCAGAAGTTCTGCTGAAGGAGACACCGCAGGCAAACACGCTTTGTTTATGCACCTGTCAATTGACTCATATTCAGGAACGATGCATTCCAGAGAAGGAAAAGGAGCGATTCCTCCGGCAGGACTTATGATTGTATTCCTGGAAAAGAGCCTGGCACACAGGTTGTGTTTACAGAGTTCATTCTTCATGACTGGAATTGAGGTGAACGGGTTGACTTTGGATTGGGATTTGAAGTTATTGAATCCCACGGAAGTCTGGATTGAAATAATGACAAACAGTTGCGGTTCCAGTTCGCATTTTATGTTTTGGATTAGTGGATAAATTACATGACATAATTTTTTTGTCCGGATCTATTAAATGTTTGTCTACAtaaagaaacagttcacccaaa
>TCONS_00042106
CCGTCTTCCTCCTTATGCACCATAATCAATCTCAGACATCAAAAAAGATAAAATCATGTTGACATTGTGTAATCCAGTTAGCCTGTTTTTTTCACGATCCGTCCAGCAATGATGCTCGCTTTATTTTCCTCTCAAGTAGAAACTGAGGCTgccgaaaataaatgaatgctggGAATCGACACGTCGTGCACCTGTATGTCAGAGGCCTGTTAGTTCTTCCGTTACAGCAACAACACGAAGCCCCTCAACGTCCAGCGGCTCTCGGTGGGCATTTGACCCGCTACTATGAGTCTAACAGTAGGAATGAAGGGGCCAGAAAACGCTCTGTTTGTTTTTCCACATTCTACTTCGATCTGAAGCTGAGAATTCGCGTCAGTTTGATCTACACATGAGCTCTCGCTACGAGCGCCGAGAAACAACAGGACGCGGCGAGGCTCATTCAGCGCGTGTTTGACTTTCCCCTCAGAAAACCGCGCGCTTCAAAGAAACGCCGTACGACGAACGAGACTCAAAACACCTCACCTTACATCATTGAAATAACAAACTGACTTTTATTGAGCCCGAAAACTAATATTATTCCCTCAGCACAAACTGGTGACTGTATTATTGCGATTTTCAACCGAGAGAAGAGATGGACATACCAGAAGTTCTGCTGAAGGAGACACCGCAGGCAAACACGCTTTGTTTATGCACCTGTCAATTGACTCATATTCAGGAACGATGCATTCCAGAGAAGGAAAAGGAGCGATTCCTCCGGCAGGACTTATGATTGTATTCCTGGAAAAGAGCCTGGGAATCCTTCGCTCATGTCGGCCAGGTTGGTCATGCTGCCCCCATGGGTGCCATTCAGGGTGCTGCTGTACTGCTCGATGTTCTTGCTGATCTCATGCTGGCTGTCCTGGATCTGGGAGAGTTTGCTTCGAGCCTGCAATAAGCACGTGTCAGGGTTATAGCTGCTTTTTGCATGTTTTATTTCTTTGTGATGCTATTATATGAAGCACTTTGTCTGGTGTCTACCTTCTAACTTCATAAGTAAACACATTAGCGtgactgtgtttaaaaaaaagcagGCATTTAGGCATTTGTCGCCCTCTAGTGTTcacttttgtttcatatttaaagCAACGTTACACTTAAATTTTTAGAAATAGGTTCATTTTACAAGTCATAGTTCATTTTTGAATCTATAAAGCAGATCTCCGGTTTtcagtacttttagcttagcttagcataaaccatggaatcagattagaccattagcatctagctAAAAAAGACTTTCAATAATTTTCCAATtcaaagcttgactcttctataCTTACACTGTGTACTAAGGCATAAAATTCAAGAAACCTTGCTGCCATACCATGATGCCATTCCCAAATTTTTGTTGCTTGGtttgaacacttttttttaattcaaaggtTTAGTTGAcccataaatgaaaattctgtcataatttactcaccctttacttaaACCTTGATGCATTtcttctgttaagcacaaaagaagatgtcttgaaaaatgttgaaaccaCTGTTTGACATTATGCAAATACACAGCACACGAAAAGTCCCCAACTGGGTAACTAGATTAAAAGCAttgtgtaatatcattgcgcctggtacggcagcaaagtttcttgattattagcCCAGAATAAGAGTATATCATGAATTAGTCTGTATCAGCACACGATGTAACTATAGAAgagacatttgtatttttaaatatttatactgtgtatatacactcaccagccactttactaggtacaactgtccaactgctcgttaacgcacatttataatcagccaatcacat

Function

GO:

id name namespace
GO:0043966 histone H3 acetylation biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117544

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040314 False 1188 lncRNA 0.43 3 15787981 15811122
TCONS_00042106 True 1827 lncRNA 0.41 3 15788139 15937268

Neighbor

gene id symbol gene type direction distance location
XLOC_020307 si:dkeyp-70f9.7 coding upstream 39541 15747337 ~ 15748440 (+)
XLOC_020306 BX323550.1 coding upstream 53138 15732967 ~ 15734843 (+)
XLOC_020305 fam32a coding upstream 66158 15720381 ~ 15721823 (+)
XLOC_020304 CABZ01090041.1 coding upstream 144922 15633013 ~ 15643059 (+)
XLOC_020303 lpl coding upstream 157560 15624371 ~ 15630421 (+)
XLOC_020310 stil coding downstream 22576 15959844 ~ 16016271 (+)
XLOC_020311 serpinc1 coding downstream 84943 16022211 ~ 16028191 (+)
XLOC_020312 dph5 coding downstream 159917 16097185 ~ 16121408 (+)
XLOC_020313 CR751228.1 coding downstream 340230 16277498 ~ 16277625 (+)
XLOC_020314 dbt coding downstream 355803 16293071 ~ 16305821 (+)
XLOC_020300 NA non-coding upstream 427797 15358159 ~ 15360184 (+)
XLOC_020293 NA non-coding upstream 686555 15099470 ~ 15101426 (+)
XLOC_020292 NA non-coding upstream 722029 15058189 ~ 15065952 (+)
XLOC_020291 NA non-coding upstream 777293 14991684 ~ 15010688 (+)
XLOC_020322 BX322568.1 non-coding downstream 702042 16639310 ~ 16639425 (+)
XLOC_020324 NA non-coding downstream 873016 16810284 ~ 16811361 (+)
XLOC_020339 BX908731.2 non-coding downstream 1887191 17824459 ~ 17824573 (+)
XLOC_020344 NA non-coding downstream 2306490 18243758 ~ 18304288 (+)

Expression


Co-expression Network