XLOC_002031


Basic Information

Item Value
gene id XLOC_002031
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17459657 ~ 17497772 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005854
TTAACATACAAACCATTCCGACTTTAGTGAAAACTGCCACAcatgtttgttttactttggtGAAATCTGGACTAAATGCTTCGTTTCCAATAAcgcttttttaaaataagttttagcAAATTAAGCTTGAAGATCATGATGACGTAGCCTATGTAAAAGAAACACTTGCACGTGTGCTGCGGCTACTGCACACTAATTTAAGTAATCTGGGCAACCTGCTGATCATTTAATGCAGGCTATTTAATCGATATCTAAGCATTATTGTCCATACTCATTAAGGGTATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGTGGAAACATATCCGAGCGGAACTATGGAACAGCAACACACAGCAATGGAAACGTGTGAAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAACCTCACACAGCATTTTGTACTTTGCTGGATTCTTCTGTTGTCAGAGGAAAGGGCATTTGCAAGCAAACTCTGCCTCAATACACCATTGACTGGCACCACAATGAATCTTCACTCACCCTCTCAGGCACGTGgaaccacacaaaaacaccagAGAAGAAGCAAAACACGAAAAACACAAGGAAGCAGAAATAATCCAAATGCTCCTGTAAAATTGAGAAACAGATTAGAATGAACTGACAGTGTATACAAGTGTCAAAGATATCATTTTGTATTCATAATTATAGGATGTATACTGACATCTAGCGGCACGGATGTAGGCAAAAGTACATTTACAATTACTGTGAAAAGAAAATGCCTGGTTCACATCAAGCCATAATTAATTTACTCCACAAGCAAAATTGTTGGATAACAAGATGAGTAACCAAATAAGGTGACCCCCTTcaaatttaacagtttttttagaAGACTAGTAATATGAGTAGGATAGCATGCATGTATATCattgaaaattatatttttatactgtgtataacataacaaaatattaaacaataacaagtgtggatgtttcccagagatgggttgtgggtggaggggcatccgctgcgtagaaacatgctggataagttggcgtttcatttcgctgtggcgaccccggattaataaagggactcagcccacaagaatataaatgaatgaatttgctattattatatttgttggtTTATTGTAGCCCTTGATCTCCATTTTTTAAgagtgttttttaataaaactaaaatgtccAGTTTGAC
>TCONS_00005855
ACGTAGCCTATGTAAAAGAAACACTTGCACGTGTGCTGCGGCTACTGCACACTAATTTAAGTAATCTGGGCAACCTGCTGATCATTTAATGCAGGCTATTTAATCGATATCTAAGCATTATTGTCCATACTCATTAAGGGTATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAACCTCACACAGCATTTTGTACTTTGCTGGATTCTTCTGTTGTCAGAGGAAAGGGCATTTGCAAGCAAACTCTGCCTCAATACACCATTGACTGGCACCACAATGAATCTTCACTCACCCTCTCAGCAGGTACCGCGGGGACTCAGGGAGAAAGGGCAGAGTCAGTAGCTGCAGGAGCCCAGCCGCACCACTGAAAGCCAGCAGCCAAATCCAGCCCTC
>TCONS_00005856
ACTCATTAAGGGTATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAAGTAAGAGCGCCATGACTTTTTCATGCCCTGGAACACAACAGTATTAATATCTTTCAAAGCAATCAAAAAATGCTCACAAGCAAGACTTCTGTTCTGTCCGTCCATGTTTCTCACCTTAGAGCTTGTCGCCGCATCCAGCTGTCGGATGGTGGTTTAAATAATTTCTGGAGGTCTGGCGGTCTCTTCTTACCTCGGTGTAATTGAAGTCGCTGTTGGTGGCCAGGAACACTTTAGCGACCTCTTTGATGCGGCTCAGTAACACAGGAATACGAGGCTAAACCAGAGCAAATGCAGGTGAAGGAGTGTTTGGGACATTCAAATCTATTATATCAGCAGCAATGGATGAAGTAAAAACAAATTGACGTCTCCATAACTTCTCCATGAAGCATAATGTCTCCAGTCAAAGTAGAAATGCTGATTACTCCAGTATTAAAAGCAAAATGTATTTACTGATCATTTATTTAGCAAGAAAATGCAGAATTTTCTTGCCCAAACTTTTCATACACTGAGAACCATTCTGATAATTAATGATGACTCAAATGTCCTAATGATTAAAGAGGCCCCTATTATGGCTATTTGAAAATaatcttccatgcagtgtgtaacacaacactaagtgaatgaaaacatccagctaaggtttaaatctgaaagtgcgc
>TCONS_00005857
ACTCATTAAGGGTATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAAatttttgatacaataacctacgctgtaACGTGGGATTCGCCggccgtttgctattaaaggaagaaACAACAGAGTCAATTATGTATGGGagtttgtcagtaactgttacatttcatatggaccagtttcttctttctccagatcataacatgtaagtgtaattaaaattgttgcctcgttttctgtagtttgctAAATATGTATTTGATTGTGTGTTCTAACTTGTAAACACTTCAATACAATCTATtacagatcagtgcttgtactgtatctctcaggttaaatctgtatggggctatttttaaatattgcatccaaaaccatgttgaaaacgtgacgcatgcttcttcctttacctgtttaaatgcgtttc
>TCONS_00005858
ACTCATTAAGGGTATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAACCTCACACAGCATTTTGTACTTTGCTGGATTCTTCTGTTGTCAGAGGAAAGGGCATTTGCAAGCAAACTCTGCCTCAATACACCATTGACTGGCACCACAATGAATCTTCACTCACCCTCTCAGGCACGTGgaaccacacaaaaacaccagAGAAGAAGCAAAACACGAAAAACACAAGGAAGCAGAAATAATCCAAATGCTCCTGTAAAATTGAGAAACAGATTAGAATGAACTGACAGTGTATACAAGTGTCAAAGATATCATTTTGTATTCATAATTATAGGATGTATACTGACATCTAGCGGCACGGATGTAGGCAAAAGTACATTTACAATTACTGTGAAAAGAAAATGCCTGGTTCACATCAAGCCATAATTAATTTACTCCACAAGCAAAATTGTTGGATAACAAGATGAGTAACCAAATAAGGTGACCCCCTTcaaatttaacagtttttttagaAGACTAGTAATATGAGTAGGATAGCATGCATGTATATCattgaaaattatatttttatactgtgtataacataacaaaatattaaacaataacaagtgtggatgtttcccagagatgggttgtgggtggaggggcatccgctgcgtagaaacatgctggataagttggcgtttcatttcgctgtggcgaccccggattaataaagggactcagcccacaagaatataaatgaatgaatttgctattattatatttgttggtTTATTGTAGCCCTTGATCTCCATTTTTTAAgagtgttttttaataaaactaaaatgtccAGTTTGAC
>TCONS_00005859
ATTTTATTGTGGAAAACAGGCCAGAGATGATCAACACAACGGAAATCAAGAACAGCGCGAGATCTGACTGAACCAAAACAATCAGCAGAGCACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAACCTCACACAGCATTTTGTACTTTGCTGGATTCTTCTGTTGTCAGAGGAAAGGGCATTTGCAAGCAAACTCTGCCTCAATACACCATTGACTGGCACCACAATGAATCTTCACTCACCCTCTCAGGCACGTGgaaccacacaaaaacaccagAGAAGAAGCAAAACACGAAAAACACAAGGAAGCAGAAATAATCCAAATGCTCCTGTAAAATTGAGAAACAGATTAGAATGAACTGACAGTGTATACAAGTGTCAAAGATATCATTTTGTATTCATAATTATAGGATGTATACTGACATCTAGCGGCACGGATGTAGGCAAAAGTACATTTACAATTACTGTGAAAAGAAAATGCCTGGTTCACATCAAGCCATAATTAATTTACTCCACAAGCAAAATTGTTGGATAACAAGATGAGTAACCAAATAAGGTGACCCCCTTcaaatttaacagtttttttagaAGACTAGTAATATGAGTAGGATAGCATGCATGTATATCattgaaaattatatttttatactgtgtataacataacaaaatattaaacaataacaagtgtggatgtttcccagagatgggttgtgggtggaggggcatccgctgcgtagaaacatgctggataagttggcgtttcatttcgctgtggcgaccccggattaataaagggactcagcccacaagaatataaatgaatgaatttgctattattatatttgttggtTTATTGTAGCCCTTGATCTCCATTTTTTAAgagtgttttttaataaaactaaaatgtccAGTTTGAC
>TCONS_00005860
GAGCGGAACTATGGAACAGCAACACACAGCAATGGAAACGTGTGAAGTTCCTTCACAAGCTCAGGAACCACAAGGAACGTCTTCCAGCCCTGTCGCTTCTTGGACTTCAGGATGTCCCCAAAAATGTGATCGCCCACATAGAGGATGTCTTTGCCCTTCACATCCAGCAAGTCACAGACTAGATCAGAAGATCCTGAGGAATGAGTTAAACAGTGATAAAGTAAACACAGTGGCTTCATGTAataggaggatgatgatgatgatgaagaagggGATGTCGGGTTTTACCTCCAGAATACACCGTCCCATGCTGGAGGTCTCCGGTGTACGTGCCGATACGCAACTTCCCAGTGTCCTGCAGGAGAAAGGGCAAGAGAACACACTTCACTCCTCGCTGACGGCAGAAACTCACTGTGTCCACTTGGCGTAAAACTGTCCCTCCAGCGAAGAACAAGGGCTTCCTCGTATCCACAACCACCAGGTCAAAatttttgatacaataacctacgctgtaACGTGGGATTCGCCggccgtttgctattaaaggaagaaACAACAGAGTCAATTATGTATGGGagtttgtcagtaactgttacatttcatatggaccagtttcttctttctccagatcataacatgtaagtgtaattaaaattgttgcctcgttttctgtagtttgctAAATATGTATTTGATTGTGTGTTCTAACTTGTAAACACTTCAATACAATCTATtacagatcagtgcttgtactgtatctctcaggttaaatctgtatggggctatttttaaatattgcatccaaaaccatgttgaaaacgtgacgcatgcttcttcctttacctgtttaaatgcgtttc

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0044020 histone methyltransferase activity (H4-R3 specific) molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005854 False 1663 lncRNA 0.41 6 17459657 17487369
TCONS_00005855 False 888 lncRNA 0.48 5 17459798 17497772
TCONS_00005856 False 1202 lncRNA 0.44 4 17459926 17467605
TCONS_00005857 False 916 lncRNA 0.43 4 17459926 17468298
TCONS_00005858 False 1334 lncRNA 0.41 5 17459926 17487369
TCONS_00005859 False 990 lncRNA 0.39 4 17459939 17487369
TCONS_00005860 True 860 lncRNA 0.43 4 17460733 17468298

Neighbor

gene id symbol gene type direction distance location
XLOC_002030 dre-mir-301c coding upstream 5085 17454490 ~ 17454572 (+)
XLOC_002029 dre-mir-130c-1 coding upstream 6154 17453363 ~ 17453503 (+)
XLOC_002028 NA coding upstream 10618 17442234 ~ 17449039 (+)
XLOC_002027 NA coding upstream 21173 17438158 ~ 17438484 (+)
XLOC_002026 NA coding upstream 37634 17420675 ~ 17422023 (+)
XLOC_002032 NA coding downstream 85609 17583381 ~ 17587877 (+)
XLOC_002033 kcnn2 coding downstream 94501 17592273 ~ 17674345 (+)
XLOC_002034 drg1 coding downstream 183302 17681074 ~ 17691171 (+)
XLOC_002035 dre-mir-218b coding downstream 197493 17695265 ~ 17695340 (+)
XLOC_002036 slc20a1b coding downstream 215250 17713022 ~ 17728165 (+)
XLOC_002040 BX927277.1 non-coding downstream 392317 17890089 ~ 17890203 (+)
XLOC_002042 NA non-coding downstream 509351 18007123 ~ 18071506 (+)
XLOC_002043 NA non-coding downstream 742778 18240550 ~ 18282435 (+)

Expression


Co-expression Network