XLOC_020314 (dbt)


Basic Information

Item Value
gene id XLOC_020314
gene name dbt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 16293071 ~ 16305821 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040325
atatcagaAATGTCTGGAAAAAAATTTGCCCTTGGCCAAAAAACTCACGGATTGGTCAGCAAAGCGGGGCGTGCGAGTGACGTCATTTCCGGTTGCATCAAATCGCTGGGGAAAGATGGCGGCGGTCATTACTGTGCGGGCTCCATTCGTGTTTATGAGACGCCTGGTCTCTGCACGCCTGCACAGAAACTGCTGCTCTAAACTGCCAGCCGCTTGTCTTGTACTCAGACCTCACTCGTATTCCCTCGTTGCTGGAAGGCAGCATCGCTATTTTCACACTAGCTATGTCACAGCTCGACCAATTGTACAGTTCAAACTCTCCGACATTGGGGAAGGAATTATGGAGGTGACGGTTAAAGAATgGTATGTGAAAGAAGGCGATAAAGTCTCTCAGTTTGACAGTATCTGTGAAGTGCAGAGTGACAAAGCCTCTGTCACCATCACCAGCCGATATGACGGAGTAATCCGCAAGCTCTACTACGATGTCGATTCCATTGCCCTCGTCGGTAAACCTCTCGTGGACATCGAAACGGACGGCGGTCAGGCTGAAAGTCCTCAGGAGGACGTGGTGGAGACGCCTGCTGTGTCCCAGGAAGAGCACACGCATCAGGAAATCAAAGGACACAAGACTCAAGCCACTCCTGCGGTCAGACGCCTAGCCATGGAGAATAATATCAAACTAAGCGAAGTTGTCGGCACTGGAAAAGATGGACGCATTCTCAAAGAAGACATCTTGAACTTCATCGCCAAACAAACTGGGGCCATTTTACCTCCAGCACCCTTCCAGGAGATTCGTCCTCCACCTCCTGCGGCTGCAGCACCTTTAACTCCATCTGCAAAGGCAACTCCACCGAGTGTACCTATTCCTGTGATCCCTAAACCTGTGTTTACGGGCAAAGACCACACTGAACCTATTAAAGGCTTTCAGAAGGCGATGGTTAAGACCATGTCAGCAGCACTGAAGATCCCTCACTTCGGCTATAAAGATGAAGTAGATCTGAGCCAGTTGGTCCGGTTGCGCTCTGAACTCAAAGGTCTGACTGAATCACGAGGAGTGAAGCTCAGCTACATGCCCTTCTTCATCAAGGCAGCGTCACTCGCCCTTCTCCATTTTCCCATTCTCAACTCGTCTTTGGATGAAAACTGCACAAGTATCACCTATAAGGCTGCTCATAATATCGGACTGGCGATGGACACAAGTCAAGGTCTTCTGGTTCCCAATGTCAAGAACATACAGATGCTTAGTGTTTTTGAGATCGCAGTGGAGCTCAACCGCCTTCAGATATTGGGAGCATCGGGACAGTTGGGGACCTCTGACCTCACAGGGGGAACGTTCACACTCTCAAACATTGGATCAATTGGAGGAACCTATGCAAAGCCGGTCATATTGCCGCCTGAGGTTGCTATTGGTGCTCTTGGGAAAATTCAGGTTTTACCTCGCTTTAACCACAAGGACGAGGTAGTGAAAGCACACATCATGAACGTCAGCTGGTCTGCAGACCACCGAATCATCGACGGAGCCACCATGTGTCGCTTCTCCAACCTGTGGAGATCGTACCTGGAGAACCCTGCCTCCATGGTCCTCGATCTGAAATAGAAAGCATACATCCTCCAACCACATCTAGACTCCGTGTGACTCCATATCCCGCCCCTAAAGAGTTTTTCCGTTAAACTGggacactgagctttttgaatcTTCATGACACGTTTGAAGAAAATTTCCACAACGGCATCAAGCTAATAACTGgcgttttgttgttttttttcttgtggtTTATTCTCCTCTCGTTGCCTTACTGATAAAAGATGTTACATCTACCAGAGCGTATTGTGAACTGTTGAATGTTAGAGAATATGAACTTAATGTAGCAATATCGCATACCCACAATTTTTCATTTTCTACATACTTTAAAATCTCCAATGGTGTTGCACAAGGGTTTTAAAATCAGCTATGAGCTAGCAATTATGTCTACAATGTCACCCTATAATCAAACAaaagaaattatattttgtaaaaagaaagtttatagaaatattattactattattattattatgtcttttTAAAACgttgtatttaaaaatgtcttcTTGACGcaaaatataatttcttttttgGGAATGAGACATGTTCATGATTCATGTTTTTTCAGTGCTGCTTTTCTTTCCAgtcattgtttttattaaatatatgtgaTTCAAAATGGTTGTGGGGAATCTGCATTGAGACATTTTCTCATCTCCAGTGTGATGATTTAGTTGGCGTGTTCTGCCACTCCTGAATGATGGGAAATTCGTCATTGgatatttgtgtgagtgtgtgtgtgtgtgcgaatctGCAAATTAGTGTTTtaataaattgtacatttaagGA
>TCONS_00040326
GGAAAAGATGGACGCATTCTCAAAGAAGACATCTTGAACTTCATCGCCAAACAAACTGGGGCCATTTTACCTCCAGCACCCTTCCAGGAGATTCGTCCTCCACCTCCTGCGGCTGCAGCACCTTTAACTCCATCTGCAAAGGTCTGACTGAATCACGAGGAGTGAAGCTCAGCTACATGCCCTTCTTCATCAAGGCAGCGTCACTCGCCCTTCTCCATTTTCCCATTCTCAACTCGTCTTTGGATGAAAACTGCACAAGTATCACCTATAAGGCTGCTCATAATATCGGACTGGCGATGGACACAAGTCAAGGTCTTCTGGTTCCCAATGTCAAGAACATACAGATGCTTAGTGTTTTTGAGATCGCAGTGGAGCTCAACCGCCTTCAGATATTGGGAGCATCGGGACAGTTGGGGACCTCTGACCTCACAGGGGGAACGTTCACACTCTCAAACATTGGATCAATTGGAGGAACCTATGCAAAGCCGGTCATATTGCCGCC

Function

symbol description
dbt Predicted to enable acetyltransferase activity and lipoic acid binding activity. Acts upstream of or within branched-chain amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in brain; gut; intestine; liver; and muscle. Used to study maple syrup urine disease. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human DBT (dihydrolipoamide branched chain transacylase E2).

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016407 acetyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0031405 lipoic acid binding molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation

ZFIN:

id description
ZDB-GENE-050320-85 Predicted to enable acetyltransferase activity and lipoic acid binding activity. Acts upstream of or within branched-chain amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in brain; gut; intestine; liver; and muscle. Used to study maple syrup urine disease. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human DBT (dihydrolipoamide branched chain transacylase E2).

Ensembl:

ensembl_id ENSDARG00000101561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040325 False 2374 mRNA 0.45 11 16293071 16305821
TCONS_00040326 True 502 processed_transcript 0.49 5 16302317 16303328

Neighbor

gene id symbol gene type direction distance location
XLOC_020313 CR751228.1 coding upstream 15446 16277498 ~ 16277625 (+)
XLOC_020312 dph5 coding upstream 171663 16097185 ~ 16121408 (+)
XLOC_020311 serpinc1 coding upstream 264880 16022211 ~ 16028191 (+)
XLOC_020310 stil coding upstream 276800 15959844 ~ 16016271 (+)
XLOC_020308 BX323550.5 coding upstream 355803 15787981 ~ 15937268 (+)
XLOC_020315 lrrc39 coding downstream 2629 16308450 ~ 16312217 (+)
XLOC_020316 osbpl1a coding downstream 14255 16320076 ~ 16348536 (+)
XLOC_020317 ankrd29 coding downstream 112867 16418688 ~ 16431139 (+)
XLOC_020318 si:dkey-121a11.3 coding downstream 140231 16446052 ~ 16477891 (+)
XLOC_020319 ier5 coding downstream 191849 16497670 ~ 16499153 (+)
XLOC_020306 BX323550.1 non-coding upstream 558228 15732967 ~ 15734843 (+)
XLOC_020300 NA non-coding upstream 932887 15358159 ~ 15360184 (+)
XLOC_020293 NA non-coding upstream 1191645 15099470 ~ 15101426 (+)
XLOC_020322 BX322568.1 non-coding downstream 333489 16639310 ~ 16639425 (+)
XLOC_020324 NA non-coding downstream 504463 16810284 ~ 16811361 (+)
XLOC_020339 BX908731.2 non-coding downstream 1518638 17824459 ~ 17824573 (+)
XLOC_020344 NA non-coding downstream 1937937 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 1985653 18291474 ~ 18291797 (+)

Expression


Co-expression Network