G85449


Basic Information

Item Value
gene id G85449
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 76330228 ~ 76332586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU94221
ctcccatagctccttccaccagcctcctctgctcctAGTCCTTAACAAGCTTCATGCTTTCAAGTCCTTTATTGTCTGTAAACCTGCAGTCAATAAAAAGCGACTATCTTGTGATGATCATCCTCCTAAATCCTACAAATCCTTAGGAGGCTGCCATCTTTATGATCTAGCATGAGTCAGTACTCTAGTTGTGCTCCAGGGCCCTGTGTCAGGGTGGGGCTGGGTtgggcagtcaattcaggaagtgatttgaatttAAAATCAGAAGAAAAAAATGTGCTTCTACCTTTCAGTTTATTGAGAAGTCATTAAAAATAAGTATCCTATTTCGATTATTGAATTGTATTGttggtttacttcctgaattgactgcctacaaactgaattgagcccaaccctgctCTGTGTGAATCCCTCCAAGCCAAACTTATGATGGCCCTGGTCTGGCCAAGGCAGTCCGCCTCAAACATCCAACAGGAGACCAGGGAGGCGTCTGTTCCAGCAGTAACCTGACAGAGGCAATGGGATGACTAGGCCCACAGCTCCACCTGGTGGTCATCTCCCGTACTACACCAATCGGATATGGTAAACATCATGATTGTCTTTGTTGATTATGCTTTTTATTAGATTACCATGAGTACCTCCTGCCTGCAATTAATTTTTGATAACATTCTAGACATTGACAAGCACAACCACCAAAAATAACAAATGTAACAAAATACATtacatcaccaaaagtatgtggacacctcttgtcgaacatctcattccaaaatcttgggcattaaaatatggagttggtccccccccttttctgctataacagccagcactcttctgggaaggattttcactagatgttggaacattgctgtggggacttgcttccattcagccacaagagcgttagtgaggttgggcacttatgttgggcaattaggcctggctcgcagtcggtgttccaaatgtgttcgatggggttgaggtcagggctctgtgcagaccagtcaagttcttccacaccaactGTCGACAAATCATtaatgtatggacctcgctttgtgcaagggggcattgtcatgctgaaacaggaaagggccttccccaaactgtttccacaaagttggaagaacagaatcatctagaatgccattgtatgctgtagcattaagatttcccttcactggaactaaggggccaagtccgaacaataaaaaataagccccagaccatttttcGTCCTCCACTaatctttacagttggcactatgcattggggaatGTAGCACTCTCCTGGCatcaccaaacccagattcgtctgtcagactgccagatggtgaagtgtgattcatcactccagaaagcatgtttccattgctccagagtccaatggctcaacaccactccagctgacgcttggcattgcgtgtggtgatcttaggcttgtgtgtggctgctcggccaggGAAACCCATTTCGTGAAGCTCCCGACGAAACAGTtcctgtgctgacgttgcttcctgaGGCAAAAAATTGacagactgacttgttggaatggtggcatcctatgatggtgccacgttgaaagtcactgagctctttagtaaggccattctactgccaatgtttgtttatggagattgcatggctgtgtgctcaaattttatacacctgtcagcaaccggtgtggctgaaatagccaaatacactaatttgaaggggtgtccacatacttttgctgaTGTATTGTATGTATGAAAAAATAGCACACCATATTGAAATCTAAAGCATAAATGTGTAATTAAATGAGAAATCAAGTGAACAGTTTTCTATCCCACAGGAGTGGCCAGTGTATAAATAAGAGGTTCTACGTCTGTGATTTTGAGTTTATAACACCATTTACAAGTATCTACCCGGGCTATCAAACCAATCTCAACAACCCATCCCACTGTGTCAATAAAACTACAGTGATTTAAGCATAATGAGTGCAGAAGGACCTAGATATTGTGGAATTGAAAAATTATACTAATTTAGCTCCCTGGAAATCCCCCTATTATAACCCTCTGAATATTGCCAATGATGATCATTATCTATTTCAGCTCTAGTTTAGTGCACAATCGTATATTGGTTGCTGCGAAAATAGTGGCAATTTCAATTTTgtctatattatactgctcagatTAGAGCCAATGATACAGGGGGAGAGAAGCCTGATTGCTTTCATTTGTCGACTGCTGGCTTAGCTAAACTGTTTGTGATTACATAGTGGGACAGCGAAAGCTGACAACAGCGATAATGGGGCTTCAAATACATGTGGCCTTGTTCAGGAGTTGTACTTTTTTTTTGAAAGCCAATTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU94221 True 2359 lncRNA 0.43 1 76330228 76332586

Neighbor

gene id symbol gene type direction distance location
LOC110532683 LOC106577051 coding upstream 152250 75833931 ~ 76177978 (+)
LOC110529516 LOC106577050 coding upstream 606075 75695432 ~ 75724153 (+)
LOC110529506 LOC106577049 coding upstream 637217 75656587 ~ 75693011 (+)
LOC110529500 LOC106577048 coding upstream 681616 75615217 ~ 75648612 (+)
LOC110529485 LOC106577045 coding upstream 790885 75535002 ~ 75539343 (+)
LOC110522192 LOC106577055 coding downstream 71595 76404181 ~ 76416951 (+)
LOC110529556 LOC106577056 coding downstream 87841 76420427 ~ 76433438 (+)
LOC110529567 LOC106577057 coding downstream 101675 76434261 ~ 76440072 (+)
LOC110529603 NA coding downstream 119679 76452265 ~ 76457775 (+)
LOC110529610 NA coding downstream 125235 76457821 ~ 76459823 (+)
G85432 NA non-coding upstream 28939 76300798 ~ 76301289 (+)
G85431 NA non-coding upstream 29736 76300126 ~ 76300492 (+)
G85413 NA non-coding upstream 49644 76280350 ~ 76280584 (+)
G85391 NA non-coding upstream 76596 76253395 ~ 76253632 (+)
G85386 NA non-coding upstream 82831 76247192 ~ 76247397 (+)
G85450 NA non-coding downstream 338 76332924 ~ 76333208 (+)
G85451 NA non-coding downstream 2078 76334664 ~ 76334952 (+)
G85458 NA non-coding downstream 11161 76343747 ~ 76344203 (+)
G85519 NA non-coding downstream 116464 76449050 ~ 76449561 (+)
G83979 NA other upstream 1184716 75144864 ~ 75145512 (+)
G83829 NA other upstream 1216038 75112660 ~ 75114190 (+)
G83836 NA other upstream 1420422 74909225 ~ 74909806 (+)
G82111 LOC106577091 other upstream 2758491 73551616 ~ 73571737 (+)
ccdc85a ccdc85a other upstream 5254126 71036440 ~ 71076239 (+)
G86019 NA other downstream 299159 76631745 ~ 76635936 (+)
G86614 NA other downstream 791349 77123935 ~ 77124427 (+)
G87159 NA other downstream 1237429 77570015 ~ 77570470 (+)
G89667 NA other downstream 3216431 79549017 ~ 79549651 (+)

Expression


Co-expression Network