G86565 (LOC100136012)


Basic Information

Item Value
gene id G86565
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77034379 ~ 77035658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU95420
catacgtttcatgtagttcttgaccaggtttgcacacactgcagcaggtattttggcccactcctccatacagaccttctccagatccttcaggtttcgggctgtcgctgggcaatacggactttcagctccctccaaagattttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttacggagccactccttagttgccctggctggatcatccagatggtcattggcaaacttccgacaggcctggacatgctctggcttgagcagggggaccttgtgtgcgctgcaggattttaatccatgacggcgtagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctaccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccatcagtggttgccttctcaccaagctgcttgcctattgtcctgtagtccatcccagccttgtgcaggtctacaattttatccctgatgtccttacaccgtctctggtcttggccattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtcttttatacaggtaacaagttcaaacaggtgcagttaatacaggtaatgagtggagaacatgagggcttcttaaaggaaaactaacaggtctgtgagagccggaattcttactggttggtaggtgaatacttgttctccccactgtatgttaagTAGGTTGGTATTGGTTGTTGATTTTGCTTAACTTCACCATATCGCTCAAATTAAAGGGCAGTACTCAATTAGTTTAATTTGACAAGGTTAAAGTAAAGGACa

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95420 True 956 lncRNA 0.48 2 77034379 77035658

Neighbor

gene id symbol gene type direction distance location
LOC110529720 NA coding upstream 19007 76943550 ~ 77015372 (+)
LOC110529711 LOC106607701 coding upstream 95515 76935475 ~ 76938864 (+)
LOC110532693 LOC106577081 coding upstream 170157 76812280 ~ 76864222 (+)
LOC118966716 NA coding upstream 224814 76806285 ~ 76809565 (+)
LOC110529681 LOC106577063 coding upstream 229546 76697318 ~ 76804833 (+)
LOC118965545 NA coding downstream 251331 77286989 ~ 77287694 (+)
LOC100136692 cdc2 coding downstream 303996 77339654 ~ 77345543 (+)
LOC110529906 LOC106577140 coding downstream 346200 77381858 ~ 77451342 (+)
LOC110529921 LOC106577139 coding downstream 425222 77460880 ~ 77468921 (+)
LOC110529936 aedo coding downstream 446826 77482484 ~ 77484050 (+)
G86494 NA non-coding upstream 92589 76941559 ~ 76941790 (+)
G86491 NA non-coding upstream 94635 76939267 ~ 76939744 (+)
G86348 NA non-coding upstream 103948 76929156 ~ 76930431 (+)
G86347 NA non-coding upstream 105969 76927002 ~ 76928410 (+)
G86334 NA non-coding upstream 122949 76910745 ~ 76911430 (+)
G86575 NA non-coding downstream 32524 77068182 ~ 77068404 (+)
G86579 NA non-coding downstream 35466 77071124 ~ 77071338 (+)
G86588 NA non-coding downstream 54362 77090020 ~ 77090238 (+)
G86593 NA non-coding downstream 63200 77098858 ~ 77099234 (+)
G86619 NA non-coding downstream 108075 77143733 ~ 77143965 (+)
G86019 NA other upstream 398443 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 574556 76457821 ~ 76459823 (+)
G83979 NA other upstream 1888867 75144864 ~ 75145512 (+)
G83829 NA other upstream 1920189 75112660 ~ 75114190 (+)
G83836 NA other upstream 2124573 74909225 ~ 74909806 (+)
G86614 NA other downstream 88277 77123935 ~ 77124427 (+)
G87159 NA other downstream 534357 77570015 ~ 77570470 (+)
G89667 NA other downstream 2513359 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 2716115 79720751 ~ 79765359 (+)
G91064 NA other downstream 3729456 80765114 ~ 80766155 (+)

Expression


Co-expression Network