G87085


Basic Information

Item Value
gene id G87085
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77471489 ~ 77473367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU96001
TACAAAAACTACAGAACATATGGTTGTTCTCCCTATGTACACAGGAAATCAATCATTTTCACATCTGAAAACAACAGTTTGAGGAATTTGTTCTTTAATCTTCATGTCACACATCGAACCATCAAGTTTAAACAAAAGTAGTATAATTGTTCACAGTATTGGATTTTGCAGTGTTAGACTACAGTGTTTCAAGTGAAGGcacaaaacaaaataatattCTTGCAAATAAACCCACCTACCTACAAACATAAACCAGGGAGACTAGACTTGAAATATAACAGTAGCACATAATTAAACTAACTTTATCTCTGGTCATACTCAATACCtgaatcctcctctctctttctgattgTCTAGTGCTAGCAACAATCTCCTTAGGAGACCAATAAGCCCCAAAGTGCTCTTTACTCAATTGGGCAACTCTGTTGCCATTAAAATACATCTCGTTCTGCTACAAAagataaacataaatatataaagaCAAAATATAAGGAGCATGCTCTCACAATAGACAATAGCTATGCGCCTAATGCAAATTACTATAAAAaaaagaacgtctgctaaatgatggaaatgtagccaaattgtatctatgatccTATGCTATCCATTCATGATTTTGGTATCTTTATATCTGAGAATTAACCAttgatatcaggccacacccggccatgattatAGACACCTGTGTGTCCTctgacactatataaactagtcaccccacagtgtttgtcattacaccctgatgaagacagcttgtctgtacAAACGTTGGTTATTAGGTTATTAATGCATCCGAGTTCCTAGAGTGTCCTTTCattttcaagtgttctactctgctagccagcatctcgcctaaataggtgtgcgtttctttcgccTCTAAATGACGTAAATATAACTATAAAGCTATGTCAATTCAGGAGTTCCATTTTGAAAATAAAACTTTTTTTCAGAATTTAGACTTCAACCGTGGTCTATACAGCAGCACCATGTAAATAACACTAACTATAAAAAGATTGGCTATATTCATGCATTTGCTACATTGCCTTCATTTCCCCATAAAACTACATTTCCCTTTGAGACATCCAGTACCAAAATCATGAATGGATAACAAAACATACAGTTACAACAAATACCAAAAGAGACGTTTTATTTGGATTTCTTTCTAATATATTCTCATGGCTTGATGGAGTACAATGACTTGTAAACATAGATACTACATCACAGCCAATTAGGATGCATGATTTCATAAAACAGGATTTCATTCAAATGTACCCTAAcattttacttgacacccagtgtcataacacgatcataaccatgtcataacacgATCATAACCATGTAATAACAcgatcataaccatgtcataacacgatcataaccatgtcataaccatgtcataaccatgtcataacacgatcataaccatgtcataacacgatcataaccatgtcataacactgtcatgacatatttagacctgttgtaacatacagtgcattcggaaagtattcagacccctcgacttttcccCAAAAAGTTTACGTTACATATATAAGGTCATGTACATGATTGGCCTATCTgtctgatggtcataatgctttttgacagtgtcataaagtgtgttttcttagtccaagtaaagtgacacaggatgctCATAATGCTTCATGAAATTGTCAAAGTGTATTTGATGAAAAAACATGACTGTAAAGAATTTATAACAACAAAGGATTTCCGAAACAAACTTTCAAACtaaaggaaacttcttggcaggTTAAAACTAATTTGAATAACgctatatgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96001 True 1813 lncRNA 0.52 3 77471489 77473367

Neighbor

gene id symbol gene type direction distance location
rtkn2a rtkn2 coding downstream 10829 77453710 ~ 77460660 (-)
tmem26a LOC106577143 coding downstream 114708 77352007 ~ 77356781 (-)
LOC110529831 LOC106577144 coding downstream 157689 77148371 ~ 77313800 (-)
LOC110529822 LOC106577147 coding downstream 328985 77128910 ~ 77142504 (-)
LOC110529797 LOC106577148 coding downstream 352577 77104366 ~ 77118912 (-)
LOC110529928 LOC106577138 coding upstream 11252 77484619 ~ 77487187 (-)
LOC110529949 LOC106577136 coding upstream 53064 77526431 ~ 77535457 (-)
LOC110529957 LOC106577135 coding upstream 62152 77535519 ~ 77542730 (-)
tbc1d12a LOC106577134 coding upstream 133552 77606919 ~ 77623628 (-)
LOC110529991 LOC106577131 coding upstream 222540 77695907 ~ 77735548 (-)
G87081 NA non-coding downstream 10190 77461045 ~ 77461299 (-)
G87077 LOC106577140 non-coding downstream 20185 77447067 ~ 77451304 (-)
G87074 NA non-coding downstream 24864 77438836 ~ 77446625 (-)
G87018 NA non-coding downstream 116287 77354910 ~ 77355202 (-)
G87017 NA non-coding downstream 117736 77353421 ~ 77353753 (-)
G87093 aedo non-coding upstream 9144 77482511 ~ 77483926 (-)
G87100 NA non-coding upstream 19769 77493136 ~ 77493369 (-)
G87111 NA non-coding upstream 39950 77513317 ~ 77513986 (-)
G87113 NA non-coding upstream 44078 77517445 ~ 77517657 (-)
G86448 NA other downstream 603891 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 863135 76606682 ~ 76608354 (-)
G86063 NA other downstream 948008 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1071533 76324531 ~ 76399997 (-)
G85866 NA other downstream 1137353 76333468 ~ 76334136 (-)
G87090 NA other upstream 5236 77478603 ~ 77479939 (-)
G89418 NA other upstream 1576444 79049811 ~ 79050491 (-)
G90081 NA other upstream 2061391 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2410170 79862081 ~ 79917875 (-)
G90190 NA other upstream 2413308 79886675 ~ 79888180 (-)

Expression


Co-expression Network