XLOC_020324



Basic Information


Item Value
gene id XLOC_020324
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 16810284 ~ 16811361 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042107
CAGCGTCCGTCGTATGTCACCCAAAGGGGATTTATGGAGCGCTCGGAGGAAGACAAGTCCAATATATGAGACACCTCGTATAACAGCATTCTCCATTTGAACAATTAAGGGCACAATGCGGTCTAAAAAAGATGCACTTGGTATATGACAGGCACGCTCGCACACGCCACCGCTACTATCTCCAGCTGGAATGATACTGCACAAAAGCCCCGAACACTGACTCTATTGACTGCTCATCGGTGGCGTAACTCAATCGGGGTAAGAATGCGGACGGGCGGTGGGATGGGGGCGAGATATGGAGAGACGGGTAGGGCTCTCATTTGTCAGGCCGCAGTGCATCAGTGGAGCGTGAACGGCACACACAAACCATGAGGGCTCGGCCCCGACACCCTGCACCCGCTGTCAGGGTGCCGTCACAGTCCCGGCCCCAGGCATGGGGGAGGGTTAAGAGCCAAGGCCACTGGGAGAGTTAATGATGCCTGACCggagggacacacacacacacacacctgcttgaTGTCTTCCACTGTGCGTCGCTCCTTCAGATGGGAAGATCCTGTTCGGGATACTGCTGATGTGGCCTGTGCTGAGTTTTGGCTTTTGCTGCAATGTCTCAGGTTGTGCTCACTGAGTAAGAGGGATCcgtgaaactgcaaaaaaaggGGGGGAAAGGAAGTTTAGGGTACTGCAAATCAACTGCAGTGTATTGTATGGCAAGAGAAAAACTAAAACATGTAAAAAGAGAACTCAAACAGGTTAAAATTTGGCCTAATAGATGCTGTTAGTGATGGGTTAGCAGGCTGAAAAGTTGAAAATGTgaatagtGAAAATTATGCCTTGTGGACATGCGCTAACATGCTGGAAAGTtgaaaatgtgaataaattaCTTCATTTATGAAAGTACCTGTATTGAGTTTTATTTGTTACAGGTGAAATACtgcaaaaatttataaaaatataactcAAAAAGGTAAAAATTAAGCCTAATATAGGTTATACATGTTAGCACTGCGCTAACAGGCTAGTCAG

Function


GO:

id name namespace
GO:0061982 meiosis I cell cycle process biological_process
GO:1903564 regulation of protein localization to cilium biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903566 positive regulation of protein localization to cilium biological_process
GO:1903046 meiotic cell cycle process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042107 True 1029 lncRNA 0.47 2 16810284 16811361

Neighbor


gene id symbol gene type direction distance location
XLOC_020323 tm2d1 coding upstream 34767 16759010 ~ 16775517 (+)
XLOC_020322 BX322568.1 coding upstream 170859 16639310 ~ 16639425 (+)
XLOC_020321 pdzk1ip1 coding upstream 243469 16555939 ~ 16566815 (+)
XLOC_020320 tal1 coding upstream 264954 16535575 ~ 16545330 (+)
XLOC_020319 ier5 coding upstream 311131 16497670 ~ 16499153 (+)
XLOC_020325 frem1b coding downstream 306864 17118225 ~ 17191525 (+)
XLOC_020326 atpaf1 coding downstream 381406 17192767 ~ 17202113 (+)
XLOC_020327 rab3b coding downstream 392391 17203752 ~ 17213264 (+)
XLOC_020328 nrd1b coding downstream 403028 17214389 ~ 17236576 (+)
XLOC_020329 axdnd1 coding downstream 425858 17237219 ~ 17250822 (+)
XLOC_020313 CR751228.1 non-coding upstream 532659 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 873016 15787981 ~ 15937268 (+)
XLOC_020306 BX323550.1 non-coding upstream 1075441 15732967 ~ 15734843 (+)
XLOC_020300 NA non-coding upstream 1450100 15358159 ~ 15360184 (+)
XLOC_020339 BX908731.2 non-coding downstream 1013098 17824459 ~ 17824573 (+)
XLOC_020344 NA non-coding downstream 1432397 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 1480113 18291474 ~ 18291797 (+)
XLOC_020351 NA non-coding downstream 1748982 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 2425670 19237031 ~ 19238226 (+)

Expression



Co-expression Network