Gene
RNA
| Item | Value |
|---|---|
| gene id | G87389 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 77684947 ~ 77685313 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrovirus-related Pol polyprotein LINE-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU96321 | True | 367 | lncRNA | 0.36 | 1 | 77684947 | 77685313 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tbc1d12a | LOC106577134 | coding | downstream | 61319 | 77606919 ~ 77623628 (-) |
| LOC110529957 | LOC106577135 | coding | downstream | 142217 | 77535519 ~ 77542730 (-) |
| LOC110529949 | LOC106577136 | coding | downstream | 149490 | 77526431 ~ 77535457 (-) |
| LOC110529928 | LOC106577138 | coding | downstream | 197760 | 77484619 ~ 77487187 (-) |
| rtkn2a | rtkn2 | coding | downstream | 224287 | 77453710 ~ 77460660 (-) |
| LOC110529991 | LOC106577131 | coding | upstream | 10594 | 77695907 ~ 77735548 (-) |
| sh2d4ba | LOC106577151 | coding | upstream | 80631 | 77765944 ~ 77782971 (-) |
| LOC110529998 | LOC106577125 | coding | upstream | 239223 | 77924536 ~ 78308978 (-) |
| LOC110532724 | LOC106577124 | coding | upstream | 950971 | 78636284 ~ 78959395 (-) |
| LOC110530032 | ppp4r3b | coding | upstream | 1395441 | 79080754 ~ 79092872 (-) |
| G87365 | NA | non-coding | downstream | 34734 | 77649962 ~ 77650213 (-) |
| G87363 | LOC106577133 | non-coding | downstream | 37062 | 77645921 ~ 77647885 (-) |
| G87322 | NA | non-coding | downstream | 114937 | 77569329 ~ 77570010 (-) |
| G87141 | NA | non-coding | downstream | 139314 | 77545401 ~ 77545633 (-) |
| G87140 | NA | non-coding | downstream | 139565 | 77545180 ~ 77545382 (-) |
| G87425 | NA | non-coding | upstream | 60114 | 77745427 ~ 77745798 (-) |
| G87376 | NA | non-coding | upstream | 75808 | 77761121 ~ 77763616 (-) |
| G87832 | NA | non-coding | upstream | 180763 | 77866076 ~ 77866309 (-) |
| G87841 | NA | non-coding | upstream | 195160 | 77880473 ~ 77880722 (-) |
| G87865 | NA | non-coding | upstream | 225624 | 77910937 ~ 77911147 (-) |
| G87090 | NA | other | downstream | 205008 | 77478603 ~ 77479939 (-) |
| G86448 | NA | other | downstream | 817349 | 76866904 ~ 76867598 (-) |
| G86132 | LOC106577062 | other | downstream | 1076593 | 76606682 ~ 76608354 (-) |
| G86063 | NA | other | downstream | 1161466 | 76516251 ~ 76523481 (-) |
| ccser2a | ccser2 | other | downstream | 1284991 | 76324531 ~ 76399997 (-) |
| G89418 | NA | other | upstream | 1364498 | 79049811 ~ 79050491 (-) |
| G90081 | NA | other | upstream | 1849445 | 79534758 ~ 79535572 (-) |
| LOC110530200 | NA | other | upstream | 2198224 | 79862081 ~ 79917875 (-) |
| G90190 | NA | other | upstream | 2201362 | 79886675 ~ 79888180 (-) |
| G90382 | NA | other | upstream | 2456246 | 80141559 ~ 80142157 (-) |
