G87376


Basic Information

Item Value
gene id G87376
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77761121 ~ 77763616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU96308
GGACAACATACTTTATTGCTTATAAAAACCTATCCAGAATTAAGAAAATTCACATTTACAAAATGTCATTTGGTAAAACAGAACATCTACATATGGGAAAAAAAAGTCCCTTTTGTTAAAAACACTCCCATGATCACATGGAAGCAATCTAACACAAGCACACAAAATTGTAAAACTACATAAAAGACCTAGACCATCAGATGTGTAAATGGGAGTTGAAGGCCTGAATGAAAGTCCTTTAATTTGATCTTGTAATGTATGACATATAGCTCAAGTATAGCATTCATCAGCTGTAAAGATATCCTCATTCAACAATTACATTGTCAATCGACAGACACTCTTGcacagagcaattagggttaagtgctttgctcaagggcacgtcagatttttcacctagctGGCTTGGGGAGTCGAACCAGTGACccttcgattactggcccaatgttcttaaccgctaggctacctgccatagaTGGCTCTGTAACGCACTCCATTCTGGTATGAGGACAGCAATGGAGAGGGAATGAGCAGGGCATCATTGGACAGGATGAAGGTAAAGCAAGCTCAATGTGTGTAGGCACTGGCAGTTATCTAGCTTGCAGCAAACACCGCCGCTGAAAACGCTTTCAGAAGGCTTGGAGTAATGTTTCAGGAAGTCTGCTCATTCTGTGGCCAGAGGTCACTTGGATGTGGGCTGGGTGTCTTGTTGAGGTGTAAAGGCTGAGCAGAGGAGACAAGTTGGGCATCAAGACCTCCCGCACAGTTGTAATTGTATCTTTTCTACATAAAGTGCCTCCGGGCAGCCCGATCAGACAGCATTGTATTTAATATCTAACAAGAGCAGAGTGGAACAGCTCAGCACATTTTCAAGCTAAAATTAAAAAGGCGCCGACTGGGTTTGCGTTTGTGAATGTGTTTAGAAAAACAGATCATCATCAAGATAAGACAGTAAAATATTATTCAAAACATTACAGGCGAATACAATCTCTCAATCAAAACTGTCACCATGCAGCCAGATAACCAGGTCTAGTGATGTGATCACAGCACGATCCCGGCTATAGGTTGATGGGATGTGAGCGCTATGATCAGATCTCACCTGTGGTTCAAGTGGCCCATGCTGCTCTGGATGTCTCCCTGTCGGTCTGGGTGAGAGACACCGGGCTCTGTGTCTCCACTGCTGCACTTGCCCAAAATAATCCAACTCAGCTACTCTTGAGTCAACAAGCTAACAACTAATATTTCACTTAGGGGTCATCTAAGACTGATCAAAATAAAGCATGTCATCTACACACACATTGCGTCAACAGTTGTTTCCCTTAAGTTGTGTCTACATGACCGATACGCAACACTAGTTGGCATGATGCAGTACACATTGTGGAATGACAAGTATGTATGACAAGTTGTGAGACACATGACTGCTAGAAAAGACAAGGCATGATGGACAATAGGACAGAGGTTCAGCTGTGCACTTTTGGTTTTGACCGGCTGCAGACTGATTCTAATGGTTTAAAAGGTAGACTCCGCTAGATGACTGCCAcgagcagcaccacagatattgagatgagcaaGATGCAATACTTTGCGCCCAACACAGTATCTGCACGGGTTCGCTTCACTCTTACAGCATTGTAGGTAGagaatttaaaatgtaaaaaaagagaAGTTGAGGCTCACACTTTGTGGAAATTGACCCACCATGCAGTTTACTGTCTGCATctactgagtctacctttaaaataGAGCTGCATTTCTCATGTTTAGCTGAGGTAAGGGACAATGGTAGTGCCAGTTGAAAGCCTGTCACATAACAGTGCCGAAATCCTGTTGTTTCAGATTGAGCTCTAGGGCGAGGTCTTATATCGGAGCCATTGCAGCTGCACTGACGTGGTAaactcctcctcccccagtctGATACGCTACCATTCTACTCATGAAACGCTGAAGGCTAGAGAACACACCTTTTAAACCTGTGCGGCGACTTAAATTGTTGTTTTTGGATCATTGAGGTATGATGTATTGACCCAGGAATCGACCTGGGTTTATTGGTTAAGACTGTTGCCGAGGAAAACATTCACTGTGTCTGAGGCAAACCATACAAAAATGTATAGACGTATTCTTGTCCCTTGCCATGCCTCAGAGAGATCAGAGATCGGGAGGAATGTATGGTGGATAGTCCCAGTACTGTCCTCTGTAGGCCTATGCATTTCACCACACCACTCAGTAGTAGTTAAACTTGACCTTCTCAATGTCTCCGATCAGTGTCCGAGCAAAGAAGATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96308 True 2282 lncRNA 0.44 3 77761121 77763616

Neighbor

gene id symbol gene type direction distance location
LOC110529991 LOC106577131 coding downstream 25573 77695907 ~ 77735548 (-)
tbc1d12a LOC106577134 coding downstream 137493 77606919 ~ 77623628 (-)
LOC110529957 LOC106577135 coding downstream 218391 77535519 ~ 77542730 (-)
LOC110529949 LOC106577136 coding downstream 225664 77526431 ~ 77535457 (-)
LOC110529928 LOC106577138 coding downstream 273934 77484619 ~ 77487187 (-)
sh2d4ba LOC106577151 coding upstream 2328 77765944 ~ 77782971 (-)
LOC110529998 LOC106577125 coding upstream 160920 77924536 ~ 78308978 (-)
LOC110532724 LOC106577124 coding upstream 872668 78636284 ~ 78959395 (-)
LOC110530032 ppp4r3b coding upstream 1317138 79080754 ~ 79092872 (-)
LOC110530078 pnpt1 coding upstream 1329523 79093139 ~ 79109337 (-)
G87425 NA non-coding downstream 15323 77745427 ~ 77745798 (-)
G87389 NA non-coding downstream 75808 77684947 ~ 77685313 (-)
G87365 NA non-coding downstream 110908 77649962 ~ 77650213 (-)
G87363 LOC106577133 non-coding downstream 113236 77645921 ~ 77647885 (-)
G87322 NA non-coding downstream 191111 77569329 ~ 77570010 (-)
G87832 NA non-coding upstream 102460 77866076 ~ 77866309 (-)
G87841 NA non-coding upstream 116857 77880473 ~ 77880722 (-)
G87865 NA non-coding upstream 147321 77910937 ~ 77911147 (-)
G87866 NA non-coding upstream 147582 77911198 ~ 77911441 (-)
G87908 NA non-coding upstream 207788 77971404 ~ 77972389 (-)
G87090 NA other downstream 281182 77478603 ~ 77479939 (-)
G86448 NA other downstream 893523 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 1152767 76606682 ~ 76608354 (-)
G86063 NA other downstream 1237640 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1361165 76324531 ~ 76399997 (-)
G89418 NA other upstream 1286195 79049811 ~ 79050491 (-)
G90081 NA other upstream 1771142 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2119921 79862081 ~ 79917875 (-)
G90190 NA other upstream 2123059 79886675 ~ 79888180 (-)
G90382 NA other upstream 2377943 80141559 ~ 80142157 (-)

Expression


Co-expression Network