XLOC_020326 (atpaf1)


Basic Information

Item Value
gene id XLOC_020326
gene name atpaf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17192767 ~ 17202113 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040341
ACAGATGTGGGACGGGGAAAAGATGGCGGCCGCCATGGTGCAAATGTCGTGTTTGTACCGCGGGATGTTGGCGGTCAGAAACCACGGAATCCGCCCGCTGATCCCCGGACTTGTGCCGTCTCACTTCAGGGCCTTCTCGATGAAGAAAGAGCCCGAGCTGGAGGAAAATCCATATTACAGCAAATACGAGGAGAAGATCAGGAAACTGCGGAGCTCAAAACCTCAAGAATATGAATCCCGGCTGGAGAAGCGAACTGAGTTGAAGACGGAGCCACTCGGGCGCTCCAGACAAGCAGAGTTTGTCAAATACATGGAGAAAGAGTTGGACAAACGTGGTAAAGATGGTGATGGAGGATTCACTAAAGACAAAACATTAGGCTCTATCCTCAACCTTGAAATGGTTCAGGAGAAATCTGGAGCTGAAATTACAGAGCTTTGGATGCAGTACTTCTCTAAGAAAGACACGATCAGCGCTGTCATACCAAGTTCAACATTTGACGTTATTTTTGGTCGCGCAAAATCATGTCCAACGTTTCTGTACGCTCTACCCCAGAATGAGGGTTATGAGTTTTTTGTGGGCCAGTGGGCTGGTAATGAGCTGCACTTCACATCTTTAATCAACGTTCAGACTATGGGAGAAAATGCGCCCAGCCAGCTTATTTTGTACCACTACACAGACCTGCAGAAGGACAAAGATATTGTTTTGATGACGGCTGAGATGGACAGCAAATTTGTGACGGTCCACCAGGCGCAGTGTTTGGCCAATCAGGTGCAGCTGTTTTATGGATCGCAGAGGCTTGAGACTTTCCGATTGGTCGAGACCTTTAACCACAAACCGGAGGAGTTTAAACACATGGCTGTGATCGCAGAACTAGAACAGAGTGGAATTGGACCAGCGGTCACTACGAAGTAATCATCAAAAGAcattaattataaattttttcTTATGTGGAACATCACCATTGCACAGAAACACAGTCTGGTGTGAGTCTCTGCTgccgcatataaaaacaatacaatatgtgTTTCAGTAGATATGCGTTATACGGACTCGTAGCATTCGCGCAACATGATTATCTGCTACTGTGTATGCAGATTCTGTGTATTATTACTCATTTGACTCCTGATGAAtatcactatttaaaaaaaattgaaaaacctTAAAAATGACATTGCAATACATTGTTGCCTGCAGTTCTACAAATGGCCACTGGTGTCGCTATTAACAAGTGTCTGAATTCTAAATGTAGTTCtgctaaaaacaatataataaataaaaaatgtaattgaaataattacaaattttattaaagaaataatgCACAGAAATGTGCTaactgtattaattttatttattgtgtgtattGTATTCGTTTGCATACTATTTTACGTTTTAATAGGACAAGCCCTATTATACTGGTTAAATGGTATTATTAATCTTTCTGCGTTTAGATTTTTCTGCATTGCTTAAACCAAGAATATTACACTTTACAACTATTTAATTTTTGGCAAATTAGTgcctaatttgttttattttattttttaaagattcatttttggcattttttgcctTTATTGTGACAGGACAGTAGTTAGACTGGGTGTGAGGTTCAGAGAGAGGAGATTCGAACTCAGGACATCTGAAGTGCAGCTGCCCTAAAGGCTATTTCAATGGCTAATTTGTAATACATACACTTTAATTTGTATGTTTACATACATTTTCGCACTGATGGTTAGGCTGAGGGGTTGGGTCTTTCATTTTTAagtttaactaattatttaaaaataaaaataaaaatatttcatttaaa
>TCONS_00040342
ATGTGGGACGGGGAAAAGATGGCGGCCGCCATGGTGCAAATGTCGTGTTTGTACCGCGGGATGTTGGCGGTCAGAAACCACGGAATCCGCCCGCTGATCCCCGGACTTGTGCCGTCTCACTTCAGGGCCTTCTCGATGAAGAAAGAGCCCGAGCTGGAGGAAAATCCATATTACAGCAAATACGAGGAGAAGATCAGGAAACTGCGGAGCTCAAAACCTCAAGAATATGAATCCCGGCTGGAGAAGCGAACTGAGTTGAAGACGGAGCCACTCGGGCGCTCCAGACAAGCAGAGTTTGTCAAATACATGGAGAAAGAGTTGGACAAACGTGGTAAAGATGGTGATGGAGGATTCACTAAAGACAAAACATTAGGCTCTATCCTCAACCTTGAAATGGTTCAGGAGAAATCTGGAGCTGAAATTACAGAGCTTTGGATGCAGTACTTCTCTAAGAAAGACACGATCAGCGCTGTCATACCAAGTTCAACATTTGACGTTATTTTTGGTCGCGCAAAATCATGTCCAACGTTTCTGTACGCTCTACCCCAGAATGAGGGTTATGAGTTTTTTGTGGGCCAGTGGGCTGGTAATGAGCTGCACTTCACATCTTTAATCAACGTTCAGACTATGGGAGAAAATGCGCCCAGCCAGCTTATTTTGTACCACTACACAGACCTGCAGAAGGACAAAGATATTGTTTTGATGACGGCTGAGATGGACAGCAAATTTGTGGTAAGTTGGATTAATTTACACAatataaataagcaaaaacaaaGCAATGGATTCAATGTTATTGTAAACCTCTTTCAGACGGTCCACCAGGCGCAGTGTTTGGCCAATCAGGTGCAGCTGTTTTATGGATCGCAGAGGCTTGAGACTTTCCGATTGGTCGAGACCTTTAACCACAAACCGGAGGAGTTTAAACACATGGCTGTGATCGCAGAACTAGAACAGAGTGGAATTGGACCAGCGGTCACTACGAAGTAATCATCAAAAGAcattaattataaattttttcTTATGTGGAACATCACCATTGCACAGAAACACAGTCTGGTGTGAGTCTCTGCTgccgcatataaaaacaatacaatatgtgTTTCAGTAGATATGCGTTATACGGACTCGTAGCATTCGCGCAACATGATTATCTGCTACTGTGTATGCAGATTCTGTGTATTATTACTCATTTGACTCCTGATGAAtatcactatttaaaaaaaattgaaaaacctTAAAAATGACATTGCAATACATTGTTGCCTGCAGTTCTACAAATGGCCACTGGTGTCGCTATTAACAAGTGTCTGAATTCTAAATGTAGTTCtgctaaaaacaatataataaataaaaaatgtaattgaaataattacaaattttattaaagaaataatgCACAGAAATGTGCTaactgtattaattttatttattgtgtgtattGTATTCGTTTGCATACTATTTTACGTTTTAATAGGACAAGCCCTATTATACTGGTTAAATGGTATTATTAATCTTTCTGCGTTTAGATTTTTCTGCATTGCTTAAACCAAGAATATTACACTTTACAACTATTTAATTTTTGGCAAATTAGTgcctaatttgttttattttattttttaaagattcatttttggcattttttgcctTTATTGTGACAGGACAGTAGTTAGACTGGGTGTGAGGTTCAGAGAGAGGAGATTCGAACTCAGGACATCTGAAGTGCAGCTGCCCTAAAGGCTATTTCAATGGCTAATTTGTAATACATACACTTTAATTTGTATGTTTACATACATTTTCGCACTGATGGTTAGGCTGAGGGGTTGGGTCTTTCATTTTTAagtttaactaattatttaaaaataaaaataaaaatatttcatttaaatggcTCCCATTCAAGTTTTTGGGTTGGGTGAAGGGCATCATCACTTTATAAGATCTAtcataagtattttacatttaggcTAATTTAGCCAAAACGTACAATACTAACTATAACAACTATTTATGCAAATTTAATTTATAgctgaattattaattattagttgAATATCATATAATAAAGCTATTTGACAAACAATATGCGTAGTGTCAGGAAAGGTTTgactttgtgctttatttttatttgttacgAATAT

Function

symbol description
atpaf1 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

GO:

id name namespace
GO:0065003 protein-containing complex assembly biological_process
GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly biological_process
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030219-10 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

Ensembl:

ensembl_id ENSDARG00000042799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040341 False 1811 mRNA 0.39 9 17192767 17201860
TCONS_00040342 True 2138 mRNA 0.37 8 17192771 17202113

Neighbor

gene id symbol gene type direction distance location
XLOC_020325 frem1b coding upstream 1242 17118225 ~ 17191525 (+)
XLOC_020324 NA coding upstream 381406 16810284 ~ 16811361 (+)
XLOC_020323 tm2d1 coding upstream 417250 16759010 ~ 16775517 (+)
XLOC_020322 BX322568.1 coding upstream 553342 16639310 ~ 16639425 (+)
XLOC_020321 pdzk1ip1 coding upstream 625952 16555939 ~ 16566815 (+)
XLOC_020327 rab3b coding downstream 1639 17203752 ~ 17213264 (+)
XLOC_020328 nrd1b coding downstream 12276 17214389 ~ 17236576 (+)
XLOC_020329 axdnd1 coding downstream 35106 17237219 ~ 17250822 (+)
XLOC_020330 tdrd5 coding downstream 59688 17261801 ~ 17280853 (+)
XLOC_020331 FAM163A coding downstream 84728 17286841 ~ 17300617 (+)
XLOC_020313 CR751228.1 non-coding upstream 915142 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 1255499 15787981 ~ 15937268 (+)
XLOC_020306 BX323550.1 non-coding upstream 1457924 15732967 ~ 15734843 (+)
XLOC_020339 BX908731.2 non-coding downstream 622346 17824459 ~ 17824573 (+)
XLOC_020344 NA non-coding downstream 1041645 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 1089361 18291474 ~ 18291797 (+)
XLOC_020351 NA non-coding downstream 1358230 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 2034918 19237031 ~ 19238226 (+)

Expression


Co-expression Network