XLOC_020327 (rab3b)


Basic Information

Item Value
gene id XLOC_020327
gene name rab3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17203752 ~ 17213264 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040343
cataTCCACAGAAACCGCCATCATTAGCAACTCTACACGCTATTAAACCCGCTAAATCAGGCGTTTTGTCCGCGTTAAACGCCGAGTGAGTGAAGACGCGTCGTCAGGTGCTGCAGCGTCCATAAACGCCCACCTAGAAGAGCACCAGACGGAGCTGCGCGACATCCGAGATGGCAAAAGCAGACCAGCGCTTTGGTCAGAGAGATGGATCTGATCAAAACTTCGACTACATGTTCAAACTCCTGATCATCGGCAACAGCAGCGTAGGAAAAACCAGCTTCTTATTCCGATACGCAGACGACTCCTTCAGCAGCTCGTTTGTCAGCACAGTCGGCATCGACTTCAAGGTGAAGACGGTGTACAGAAACGACAAGCGAGTGAAGCTCCAGATATGGGATACGGCGGGACAGGAGCGGTATAGAACTATTACCACAGCTTACTATAGAGGAGCCATGGGCTTCATCCTCATGTATGACATCACTAATGAGGAGTCCTATAATGCGGTGCAGGACTGGGCAACACAAATTAAGACTTATTCATGGGATAACGCTCAGGTGATACTAGTGGGAAACAAATGTGACATGGATGAGGAGAGGGTGGTGCCTTTTGAGAAGGGAAAACACTTGGCTGACCAGTTAGGGTTTGAGTACTATGAAGCCAGCGCCAAAGAGAACATCAACGTCAGACAAGTATTTGAACGCTTAGTCGACATTATCTGCGTGAAGATGTCAGAGAGAGTTGATGTGGAACCACCCATGGTCACTGGTGCCAAAACCACCCGGCTAACCGATAAGCCACCCCAACTACCTCAGAATTGTTGCT
>TCONS_00040344
ATGGCAAAAGCAGACCAGCGCTTTGGTCAGAGAGATGGATCTGATCAAAACTTCGACTACATGTTCAAACTCCTGATCATCGGCAACAGCAGCGTAGGAAAAACCAGCTTCTTATTCCGATACGCAGACGACTCCTTCAGCAGCTCGTTTGTCAGCACAGTCGGCATCGACTTCAAGGTGAAGACGGTGTACAGAAACGACAAGCGAGTGAAGCTCCAGATATGGGATACGGCGGGACAGGAGCGGTATAGAACTATTACCACAGCTTACTATAGAGGAGCCATGGGCTTCATCCTCATGTATGACATCACTAATGAGGAGTCCTATAATGCGGTGCAGGACTGGGCAACACAAATTAAGACTTATTCATGGGATAACGCTCAGGTGATACTAGTGGGAAACAAATGTGACATGGATGAGGAGAGGGTGGTGCCTTTTGAGAAGGGAAAACACTTGGCTGACCAGTTAGGGTTTGAGTACTATGAAGCCAGCGCCAAAGAGAACATCAACGTCAGACAAGTATTTGAACGCTTAGTCGACATTATCTGCGTGAAGATGTCAGAGAGAGTTGATGTGGAACCACCCATGGTCACTGGTGCCAAAACCACCCGGCTAACCGATAAGCCACCCCAACTACCTCAGAATTGTTGCTGATTTTGATCTCTACTTATGCCAACCTTTTAGCAGCAGATCAAATGTTGTTTGGTTTGATGTTATGTTGTAAGGCAATCAGAACCAACCTGAGGTGTGTTTCCTGTACTAAGCATAACTTGGTGGTTAACCACTATACTGCGATGCATCGTTAGCTAGTTTCCTGAAACTGcagtaatatgtttttattttttgttatagcTTTAAACTAGCGTACCATATTGTACCAtgtctttagcccctttcacacagttaCACTGTTAATGGCCATAAAATTACCGAAATGACTTTACCTTTACATTCAAATACTCGCTGTTCACACACAGCagaattgcagaaatttactagTAATGTTAAATCTTTTCATCCTAGAAAATTGTCAGAACTGAATTTCTGATATTTGTTAACAAAGGGCCTGTTTGCATATGATCAATTTACCAATAATTTTGTGGAagtgtctgtatgtgtaaaaggggctactTCCATATCATACCTTCCTCCTTCTCGTCTATGTCTTTCACACCTCTATTACTTTATCGCACCTCCACCATTGACAACTTTCTTTCTTGAcaaacctttttgtttttgttgggaCGGAATGGTTGTCCTACCTCCAACATTGTAGCACCTCCTTCTTGGACATTTCTCTGTGTGAGCTGACCAACTGGAAGTACATCAACTCTGTTCATTGTTGCACATTCTTTCTTGACATCCAACTCTATCATTGATGTGCCTCCTTCTTTTGACCTGCCTCTATTGTTTTGAATCTTCATCAGTGCTGTACATCCTTTGCTGGTGCACATCCATGCATCATCGTTGTATCTACAACATATCCGTCTTTGTCACACCTCCAGCATCTCCATTGTTGTTTCACCTACTTCCATCACTTCTCAGTCATTGGTGCACCCCCTTTTATTGTTCTTTCATTGTTCACCCAAGGATGTGGTAGGTCAGGGGGACAGAGTTCATGGAGCCCAGAAGCTTGAAGAGATCCACAGTGAAGTCTGGTCGGGCCCAAATTGCAATTTTGAGGGGGACACTATCACCCCAGCTTCCACCCCCACCTGTCAAATGTTTTGTCACACATCCTTGTTGTTGTCATCTCCATTGTTTTTGGGTTGCACCTATGCTCCAACAATGTTGTACCTTTTTAGTTAACAGCCCTAAGAGGTGTGGTACTTGCAGGGGAAAGAGTCACAGAGTTCATAGGACACAGAGTCTTGAAGAGGTCCCTAGGAAGGTGGGTCTCGAATTGCAATTTTAAGGGGAGACTAAACCTGCCTCCCTCCACCTCAAcctgtcatttttttttgtcacacaTCCTTGTCTCATCTTTGCCTTTGTCACCTCTTTCATTGTTGGTTTGGACTTTTGCACCAGCAATGTCGTACCTTTGTTGTTAACACTTCCAGGGGCGTAGTACTTAAGGGAAAGGGGGActcaggccgtactcacactatgtacagttgccttgaaccgggccaaagcaagcttgtccccctcctgtctcccccgatggcctgcactcacattacaattgGGCCTGGGCACACTAACGTCATTGATGCTgggctgttcagtaagcgctctcattcagcacagtggagatttctctagttatatcgctttagtccttAGGGAATCGGTGACACGCAGTCGGATATTTCacagaacagatcagccacttttgacgctcataaacaatcataaagttttgcactcacacacaagcgtactatGCCAAAGCCCAATTGAACAGcgttcagcgcactcacacttctcaaacgatccgggaaacagtaGGCCCTAAGTAGTCCATAGGGTCTAGAGGCTTGATGGGGTCCACAGTAAAGTCTGGGGAAACTAGAACATGATATTTACCCACcaccaaagcattttcccaagcAAAATCCTGTGCACAGTGTTACGCATTCCTAGCAACTCCACTGgatgtatctgtctgtctttgtcaCAACGCTTTTATTGTCATCATTTTGTCCTTGTTGCACCTTCGCCATTGTATAATGTCTATCGACGTTTGACCACCATTATTTTCGCACCCCCATTATTATGGACAGAAAGTACATATGGAACTGAGAGACCCACTGAGggaacccccccacccccacccccccaaaaaaaagtaGAGCTATATAtttaaaggtgctttcacacttgcacACACCCGGGTTCGCTTGACGTCAGAGTACGGTActtttagctagtgtgaacactGTCTTCTGAACTCTGGTGTGCACCCATAAACTGTACCCGAGtccacctgaaagaggtggtctggggtatggTTTGTGCAAACTCTAGTACGGTTTATTTCTGttatgaatgcaatcgtaccaaatgaTGGAGGTCAACCGCCAACtatacaacaaactttagttttcataacgttcattcgtgTGTGTATGTTTTGCATCACCTATCTTGGTGACAAGCaggactgacccagtgcaaacagtgataatgtctgcttgtcccCACCAAAACAACTTGTACAGACATCGCGTGATGTTCTGAAAGTTGTTAATATTGTTTTGCAGCAGATAGATGCCAGTGGCTctctgcattttgtttttgtatttttcaaaACTAAAAGATTCAGCAAAGGCAGAAGGTGTACATCATCGTTTTGTCGTTTGCCTTTCATGGCCATCACCTtgcaacagctgtacacaaaagAGCCActtgatgacgcaagcgtactgGGTTCAGAGGGAAAAAagagtgtgaaagcaccctaaatgtcaAGAAGTTCTTCAAACAACAGGTTCCAGCTACCCAGTTCGCATTGCTCGTGAATGAAACTATAGTTTCATGAAACACCAAATCATTGGACTGTGTTCATAATGACAGAACTTATTTTTAGCTAACGATGCTTTCAGGAAACACACCCCTGTTTGTTTGTAGCTGTCACGCGTGTAGTTCAGTAATAATAGTAGACTTTTAACCTAATCAGTCCATAGAAAACTCAACGCAGGGACTAGAGCAAAGCACAAAATCTACTACTTGGCTCTCAGAACTTCAGTGTTCACTGCCGAAACTAGATCTGTTGTGGCACAATCTTGCTAATCTAATATATTTAATGTAGTATATAAATACTTTAATGGAGGTGAAATAGTGGATATTCTGTTAAAAGGCACAAAAACAAACTCAGACTTTTGCAAAATTGCCATTATGCAAAAATTCGAGTTTTCAGGGTGGTTTCGATGCTCTGATtgggattcggatcagaagcagATGCACAATGTATGTTGGACTCCATCTATTTTGGGAACGTTTTGAGAATATGAGCACTTGTTTTGAGCTAGCTTTATGTTAAGAGAGGAAAAATGTGACATTTAGTAAATtagcaaattaaaaaaacaacattattaaacTCGTGTTGAACTTAGTATTGCCAGAAACCACATGTAACAGTTGTGTGTAATAATAGACTGAACACAATCAGCACATTTCATAGTCAGGTGACGTTCGGTTTGTTACGAAAGTTATAATTATGCTTCAAATCCTCAAGCAGAAGGTTAAGATATATTGTGAATTCGTGCCAGGGTGTCTTTATATTTCAGAAAATTGTAGCAAATCCCTGTTGGTTCGTGTATGTATAATCTACTTTGGATTTTTATCAAGTGACGTATGAGTGTTTTATGTAACTATAATCAAAATTATTGCAAATGAGATATTTTTCATTCCGATGTTTTAGGCAATTTTTTGGTTTCATCAGTAGATCTTTATTTTTATGCTGCTGGAATATATAGGTGTAAGTTTGCTGTCAGTGTATTTTGATTTGTAGACAATATGCACTGGGGCGTACAGTGATTGTACAGTTGTGAATGTTACTTTTAGATGCAATTTGTAACAATAAAAGCACAAATcacataataatactaatatgtaTGTGACAAGCTTGTTATTGTGTACTGAATAGTAGCCAGAATAATGATGATTTATGGGTCAAAGATAAAGTATCTGTTACGCtgaataataatagataaattaatactattaatgtaataataataatagataataatattcattcattcattttattttcggcttagtccctttattaatccaggttcgccacagcggaatgaaccgccaacttatccagcacgtttttacgcagcggatgcccttccagctgcaacccatctctgggaaacatccacacacacacacacacacacacacacacacacacacacacacacacacactcatacactatggacaatttagcctacccaattcacctgtagtgcatgtccttggactgtgggggaaaccaaagcacccggaggaaattcacgcaaatgcagagagaacatgcaaactccacacagaaacgccaactgagccgaggctcgaaccaatgacccagcgaccttctgcgcc

Function

symbol description
rab3b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Orthologous to human RAB3B (RAB3B, member RAS oncogene family).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0009306 protein secretion biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-050208-660 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Orthologous to human RAB3B (RAB3B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000114797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040343 False 822 mRNA 0.49 5 17203752 17208849
TCONS_00040344 True 5067 mRNA 0.42 4 17205608 17213264

Neighbor

gene id symbol gene type direction distance location
XLOC_020326 atpaf1 coding upstream 1639 17192767 ~ 17202113 (+)
XLOC_020325 frem1b coding upstream 12227 17118225 ~ 17191525 (+)
XLOC_020324 NA coding upstream 392391 16810284 ~ 16811361 (+)
XLOC_020323 tm2d1 coding upstream 428235 16759010 ~ 16775517 (+)
XLOC_020322 BX322568.1 coding upstream 564327 16639310 ~ 16639425 (+)
XLOC_020328 nrd1b coding downstream 1125 17214389 ~ 17236576 (+)
XLOC_020329 axdnd1 coding downstream 23955 17237219 ~ 17250822 (+)
XLOC_020330 tdrd5 coding downstream 48537 17261801 ~ 17280853 (+)
XLOC_020331 FAM163A coding downstream 73577 17286841 ~ 17300617 (+)
XLOC_020332 rabgap1l coding downstream 98847 17312111 ~ 17454457 (+)
XLOC_020313 CR751228.1 non-coding upstream 926127 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 1266484 15787981 ~ 15937268 (+)
XLOC_020306 BX323550.1 non-coding upstream 1468909 15732967 ~ 15734843 (+)
XLOC_020339 BX908731.2 non-coding downstream 611195 17824459 ~ 17824573 (+)
XLOC_020344 NA non-coding downstream 1030494 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 1078210 18291474 ~ 18291797 (+)
XLOC_020351 NA non-coding downstream 1347079 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 2023767 19237031 ~ 19238226 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_01912241_01917759 RAB3C, RAB3B coding CI01000030 null 1912241 ~ 1918777 (+)
bowfin (Amia calva) AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding CM030140.1 CM030140.1 5400208 ~ 5412801 (-)