G88477


Basic Information

Item Value
gene id G88477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 78537644 ~ 78537873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU97451
attttatttgaacaAACTATCATTTGAAAGCTCCCTTTGAAAAAACCAATTAATTGTAAACTTCATTTACTTTTGGGCCGAGCCTATGCGGTTTTGCAATTTAGGACTAGGCCTATTTGTGTTCCCCTTATACATTCACTGAATTTATGTTGCTATTGTCCAGTATAATTACCCTAAACTGTAAAAAAGACCAGtaaaagatgtaaaaaaaaaatcctgttgtCTTTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97451 True 230 lncRNA 0.46 1 78537644 78537873

Neighbor

gene id symbol gene type direction distance location
LOC118964520 NA coding upstream 8230 78526692 ~ 78529763 (+)
LOC118964491 NA coding upstream 106530 78430195 ~ 78431114 (+)
LOC110529992 LOC106577130 coding upstream 774016 77752585 ~ 77763628 (+)
LOC110529985 LOC106577132 coding upstream 872694 77662282 ~ 77664950 (+)
LOC110529971 LOC106577133 coding upstream 889717 77645939 ~ 77647927 (+)
LOC110530007 LOC106577126 coding downstream 3720 78541593 ~ 78625355 (+)
LOC110530018 LOC106577123 coding downstream 457559 78995432 ~ 79054597 (+)
LOC110530025 rl19 coding downstream 506713 79044586 ~ 79045036 (+)
cfap36 cfap36 coding downstream 519795 79057668 ~ 79080540 (+)
LOC110530085 ccdc88a coding downstream 588932 79126805 ~ 79207400 (+)
G88467 NA non-coding upstream 5922 78531488 ~ 78531722 (+)
G88447 NA non-coding upstream 18898 78518321 ~ 78518746 (+)
G88446 NA non-coding upstream 19396 78517915 ~ 78518248 (+)
G88319 NA non-coding upstream 102852 78433893 ~ 78434792 (+)
G88478 NA non-coding downstream 504 78538377 ~ 78538579 (+)
G88546 NA non-coding downstream 98448 78636321 ~ 78638139 (+)
G88580 NA non-coding downstream 145094 78682967 ~ 78683250 (+)
G88716 NA non-coding downstream 325113 78862986 ~ 78864369 (+)
G88738 NA non-coding downstream 346639 78884512 ~ 78884957 (+)
G87159 NA other upstream 967174 77570015 ~ 77570470 (+)
G86614 NA other upstream 1413217 77123935 ~ 77124427 (+)
G86019 NA other upstream 1901708 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 2077821 76457821 ~ 76459823 (+)
G83979 NA other upstream 3392132 75144864 ~ 75145512 (+)
G89667 NA other downstream 1011144 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 1213900 79720751 ~ 79765359 (+)
G91064 NA other downstream 2227241 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 3000458 81538331 ~ 81541400 (+)
G91779 NA other downstream 3339666 81877539 ~ 81879178 (+)

Expression


Co-expression Network