G89048 (ppp4r3b)


Basic Information

Item Value
gene id G89048
gene name ppp4r3b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79082571 ~ 79083009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU98058
GGCAGTTGACAGGGAAAGCTCACCTTGACTACCAGGGTGCCGGGTGTCGCGTCCGACTTGGCTGGGGAGCCGTTGGGACTGGCTGAGGCGGCGTGTGAGGCAGCTGGCTTTCCGTTGGCACCGTTGGCAGCCCCTGCAGAATGAGAGAAGGTAAACTTAAAGCTGCCAGTTGGGGTCTGCGTTGGGAAGTTCTCTTTGTCGTCACTCTCTTTAACTTTTTTTTGCTTCCATATACTTTCCGTAGCTCTCTGGGAACTCTTCCTCTGGCCTACTTTTCTCAACAGCCTCTCCTTCGTCATCATCCTCATCTTCATGGAACCACATTTCCTCATCCTCGTCCAGCGTTCGGGCATCCC

Function

symbol description
ppp4r3b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PPP4R3B (protein phosphatase 4 regulatory subunit 3B).

NR:

description
serine/threonine-protein phosphatase 4 regulatory subunit 3B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98058 True 356 lncRNA 0.43 2 79082571 79083009

Neighbor

gene id symbol gene type direction distance location
cfap36 cfap36 coding upstream 2031 79057668 ~ 79080540 (+)
LOC110530018 LOC106577123 coding upstream 27974 78995432 ~ 79054597 (+)
LOC110530025 rl19 coding upstream 37535 79044586 ~ 79045036 (+)
LOC110530007 LOC106577126 coding upstream 457216 78541593 ~ 78625355 (+)
LOC118964520 NA coding upstream 553157 78526692 ~ 78529763 (+)
LOC110530085 ccdc88a coding downstream 43796 79126805 ~ 79207400 (+)
LOC110530093 clhc1 coding downstream 129546 79212555 ~ 79221785 (+)
rtn4 rtn4 coding downstream 146657 79229666 ~ 79257493 (+)
LOC110530152 LOC106577111 coding downstream 480578 79563587 ~ 79566569 (+)
LOC110530167 st6b1 coding downstream 625161 79708170 ~ 79717946 (+)
G89077 NA non-coding upstream 79912 79001299 ~ 79002659 (+)
G88738 NA non-coding upstream 197614 78884512 ~ 78884957 (+)
G88716 NA non-coding upstream 218202 78862986 ~ 78864369 (+)
G88580 NA non-coding upstream 399321 78682967 ~ 78683250 (+)
G88546 NA non-coding upstream 444432 78636321 ~ 78638139 (+)
G89127 NA non-coding downstream 25789 79108798 ~ 79109351 (+)
G89192 NA non-coding downstream 108307 79191316 ~ 79192045 (+)
G89140 rps27a non-coding downstream 126859 79209868 ~ 79212501 (+)
G89196 NA non-coding downstream 144225 79227234 ~ 79227545 (+)
G89197 NA non-coding downstream 144784 79227793 ~ 79228083 (+)
G87159 NA other upstream 1512101 77570015 ~ 77570470 (+)
G86614 NA other upstream 1958144 77123935 ~ 77124427 (+)
G86019 NA other upstream 2446635 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 2622748 76457821 ~ 76459823 (+)
G83979 NA other upstream 3937059 75144864 ~ 75145512 (+)
G89667 NA other downstream 466008 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 668764 79720751 ~ 79765359 (+)
G91064 NA other downstream 1682105 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 2455322 81538331 ~ 81541400 (+)
G91779 NA other downstream 2794530 81877539 ~ 81879178 (+)

Expression


Co-expression Network