XLOC_002033 (kcnn2)


Basic Information

Item Value
gene id XLOC_002033
gene name kcnn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17592273 ~ 17674345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003941
CAGCAGCCACAGAGAGAGTAACTCTTACACCCAAATAGCCATGAGCAGCTGCAGATACAACGGCGGCGTGATGCGGCCGCTCAGCAACTTGAGCTCGTCCCGCAGGAACCTGCACGAGTTTGATTCGGAGTCCCAGCCACTGCAGCCCGTCTCTGCGGCGGACGCGTCCGACACACTCGCCTCCAAGCCGGAGAACAACTCCAGCACCCTCATGCCTTACGCCACGGGggacggaggaggaggaggtggaggcgGTGGATGTAGCCACAGCGGCAGCAAATCGGGCAAGAAGAAGAACCAGAACATCGGGCAGAAGCTCGGGCACCGGAGGGCCCTGTTCGAGAAGAGGAAGCGGCTCAGCGACTACGCGCTCATCTTTGGGATGTTTGGGATCGTGGTGATGGTCATTGAAACTGAACTCTCTTGGGGAGCCTACGGAAAGGAGTCACTTTATTCTTTAGCCCTAAAATGCCTGATAAGCCTTTCTACAATCATTCTACTTGGGTTGATTATCATATATCATGCCAGGGAAATCCAGTTATTCATGGTGGACAACGCCGCAGACGACTGGAGGATAGCCATGACCTATGAGCGCATCTTCTTCATCTGTCTGGAGATCCTTGTGTGCGCCATACACCCCATCCCAGGCAACTACACTTTCACATGGACGGCGCGGCTTGCCTTTTCCTACGCACCATCCAAAACAGACGCAGATGTGGACATCATCCTGTCCATCCCCATGTTTCTGCGATTGTACCTCATTGCTCGCGTCATGTTGCTGCATAGCAAACTCTTCACCGATGCTTCATCACGCAGCATCGGTGCTCTCAACAAAATAAACTTCAACACACGATTTGTTATGAAGACCCTCATGACTATCTGTCCCGGCACAGTGTTGCTGGTCTTCACCATTTCTCTGTGGATCATCGCCGCCTGGACTGTGAGGGCCTGCGAAAGATATCATGACAACATGGATGTAACCAGCAATTTCCTTGGAGCCATGTGGTTGATCTCAATAACCTTTCTAACCATTGGATATGGGGATATGGTTCCCAATACATACTGTGGAAAAGGAGTCTGTCTCCTCACTGGCATCATGGGTGCCGGGTGCACTGCTTTGGTGGTCGCTGTGGTCGCAAAAAAACTGGAATTAACCAAAGCTGAAAAACATGTACATAACTTTATGATGGACACCCAGCTGACAAAAAGGGTGAAAAACACAGCTGCTAATGTTCTCAGGGAGACGTGGCTCATTTATAAAAACACCAAGCTGGTGAGAAAGATGGACCACGCCAAAGTCAGGAAACATCAGCGCAAGTTCCTTCAAGCCATTCACCAATTAAGAAGTGTAAAAATGGAGCAACGCAAGCTGAATGACCAAGCAAACTCTCTAGTGGACCTTGCAAAGACTCAAAACGTCATGTACGACCTGGTCTCGGACCTGAACGAGCGAGGCGAGGACATGGAAAAGAGGATTGCACTGCTGGAGACCAAACTTGAGACCTTGCTCAGCAACTTACAGGCACTCCCGGGCCTCATCAGTCAGGTGATCAGCCAGCAACACCGGGACTTCCTGGAGGTGCAACTCCAGCCATACGACAAACACAGCCACGAGCGCTCGCAGTCTGTCTCCCGGCGCAGATCGTCTTCCACCGCGCCTCCCACTTCATCCGAGAGCAGCTAG
>TCONS_00003942
CCACAGCCTCTTCCCACTGAATTTTTGACTTGCATGCGCCTCAGTCCTCCTTCAATCCCTGCATTCTCTCCTCATGTCTTGTGCATGTCCTAGGAGTGCTTCCAAAATGTGTGGCTTGTGAATGGAGATCCTGTCAATCGATTTTTGTACTGACCGCTTGCCACTATTGGGCTCTGAATGGTCTTGTGTTCAGATTAAGAAGTGTAAAAATGGAGCAACGCAAGCTGAATGACCAAGCAAACTCTCTAGTGGACCTTGCAAAGACTCAAAACGTCATGTACGACCTG

Function

symbol description
kcnn2 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle.

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0043005 neuron projection cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0015269 calcium-activated potassium channel activity molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
ko04911 Insulin secretion
ko04929 GnRH secretion
ko04976 Bile secretion
ko04726 Serotonergic synapse
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-091116-41 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle.

Ensembl:

ensembl_id ENSDARG00000014939

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003941 False 1684 mRNA 0.52 8 17592273 17674345
TCONS_00003942 True 287 lncRNA 0.46 2 17669673 17674093

Neighbor

gene id symbol gene type direction distance location
XLOC_002032 NA coding upstream 4396 17583381 ~ 17587877 (+)
XLOC_002031 NA coding upstream 94501 17459657 ~ 17497772 (+)
XLOC_002030 dre-mir-301c coding upstream 137701 17454490 ~ 17454572 (+)
XLOC_002029 dre-mir-130c-1 coding upstream 138770 17453363 ~ 17453503 (+)
XLOC_002028 NA coding upstream 143234 17442234 ~ 17449039 (+)
XLOC_002034 drg1 coding downstream 6729 17681074 ~ 17691171 (+)
XLOC_002035 dre-mir-218b coding downstream 20920 17695265 ~ 17695340 (+)
XLOC_002036 slc20a1b coding downstream 38677 17713022 ~ 17728165 (+)
XLOC_002037 pigo coding downstream 73535 17747880 ~ 17759878 (+)
XLOC_002038 ccl19b coding downstream 102636 17776981 ~ 17780102 (+)
XLOC_002040 BX927277.1 non-coding downstream 215744 17890089 ~ 17890203 (+)
XLOC_002042 NA non-coding downstream 332778 18007123 ~ 18071506 (+)
XLOC_002043 NA non-coding downstream 566205 18240550 ~ 18282435 (+)
XLOC_002045 AL928714.1 non-coding downstream 1124582 18798927 ~ 18802435 (+)

Expression


Co-expression Network