XLOC_020334 (rab11ba)


Basic Information

Item Value
gene id XLOC_020334
gene name rab11ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17499905 ~ 17506843 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040361
GATTCGTTCACGAATCGGACATCGCTAAATTCAGGAGAGATCCGTTGCTAAATAACAACATTTCAGTGCGGTTAACCAACCATGGGGACCCGTGACGACGAATacgattatttatttaaagTGGTTCTCATTGGAGACTCTGGGGTGGGGAAGAGTAACCTGTTGTCCCGTTTCACTCGGAACGAGTTTAACCTGGAGAGCAAGAGCACCATTGGTGTGGAGTTCGCAACCCGCAGCATCCAAGTGGACGGGAAGACCATTAAAGCTCAGATCTGGGATACAGCAGGACAGGAACGCTACAGAGCAATAACATCAGCGTACTACCGGGGTGCAGTTGGAGCTCTTCTGGTCTACGACATCGCAAAACATCTGACTTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGCGGGATCATGCGGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACCTGAGGCACCTGAGGGCCGTGCCCACTGATGAGGCCAGAGCTTTTGCAGAGAAGAACAATCTCTCCTTCATTGAAACATCGGCGTTGGACTCCACAAATGTGGAGGAGGCATTTAAAAACATACTAACAGAAATCTATCGGATTGTGTCACAGAAACAGATGGTCGACAGGCCCGGGCACGATGAGTCTCCTGGCAATAACGTAGTGGACATCAGCGTGCCGCCCACTACTGACGGGTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCAACACCCCCTCCCCTGCTCCTACCCGACCCTTGGGTTTCAGTTCCCCTCTATTTATCTCCGCTTTCGCTCCTGTGTGTTGTGCTACAGCTACGGCTCTCTCCTCTTTTTACCTCGTCGTGATTACCACGCTAATTCTAGACGTCCCATAGAAGCGTGAATCTCTAGGTAACATTCCTTTTCCTTTCTTTGGGGGGATCTTTGTTTGTAtgtccctttttttctttttttttttttctttactatcATCAACCATCTGGTTtgcaaaacttgtttttttttttcggaagTGATAATTCGAGCGCTGATCGTGTGATCTGCTCCTACGGAAAAGGGATGGTGAGGGATCAGTGTGTCTTTGGCTTTCTCTGATGGTTATTCTCTGGGATCCACACTAAAGGCCTGCTGTCGGTTGAGCCAGATCCCTGACTTGGGCTTGAAAGGGCAAGTTTTTTTtcgtatataatatataaatatcaataaaataaataaattgcgaATTCGTCTTGTCTGGATCGCACGGATACCAAAGGAGGGCTGCTGTTATCTTTATTTCAATTTGTTAAATGTTTCAATTGTCACACCTTTAGTCCTATCCTGCAATATTTTACGCCAGGACTGCcgggtgtgtgttttttttgtttgtttttttcgtcGCAATTTGAGCAACGCATTCAGATTGCCGTATATATAGCAGTTATTGAATGCGTCTATTAAGCATTTCATGAGAAATTCTTCAAATAacagttatatataaatataaaaatgtaaactattCATTGCATCACTGAGGGATTATAGCTCTTCAGCGGGGAAATGCAATGGTCCGCAGTGTTTTAGATGGTCAGTTGTTTCACCGGTCTGTGAAAAAGtcactatatatattagattgtTTGACTTTCAGTGATACGGCTAGTTATGGAAATGCCTTATGTTTTCCCATACTGTGATTAAGATGCCTTTTTCAAGTGTGGTTATGTGACATTTACACATCCATGAAGTCACAACAGCTGTTCTGCCTTTTATCAGGTTACATTGAAATGGAAAATAAACCAAATTACTGTC
>TCONS_00040362
AATCGGACATCGCTAAATTCAGGAGAGATCCGTTGCTAAATAACAACATTTCAGTGCGGTTAACCAACCATGGGGACCCGTGACGACGAATacgattatttatttaaagGTTTCatctaaagaaaatgaatggtgaCCATGTTGCGGAGGACACATGGTTCTCATTGGAGACTCTGGGGTGGGGAAGAGTAACCTGTTGTCCCGTTTCACTCGGAACGAGTTTAACCTGGAGAGCAAGAGCACCATTGGTGTGGAGTTCGCAACCCGCAGCATCCAAGTGGACGGGAAGACCATTAAAGCTCAGATCTGGGATACAGCAGGACAGGAACGCTACAGAGCAATAACATCAGCGTACTACCGGGGTGCAGTTGGAGCTCTTCTGGTCTACGACATCGCAAAACATCTGACTTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGCGGGATCATGCGGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACCTGAGGCACCTGAGGGCCGTGCCCACTGATGAGGCCAGAGCTTTTGCAGAGAAGAACAATCTCTCCTTCATTGAAACATCGGCGTTGGACTCCACAAATGTGGAGGAGGCATTTAAAAACATACTAACAGAAATCTATCGGATTGTGTCACAGAAACAGATGGTCGACAGGCCCGGGCACGATGAGTCTCCTGGCAATAACGTAGTGGACATCAGCGTGCCGCCCACTACTGACGGGTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCAACACCCCCTCCC
>TCONS_00040363
CGACATCGCAAAACATCTGACTTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGCGGGATCATGCGGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACCTGAGGCACCTGAGGGCCGTGCCCACTGATGAGGCCAGAGCTTTTGCAGGTAAGAGTCTCCTTCTGTGTTTTCAAGTCATTGGGAATGTTTTTATGTTTCAAAAATATCCTTCCTCTTGTGTCTTTCAGAGAAGAACAATCTCTCCTTCATTGAAACATCGGCGTTGGACTCCACAAATGTGGAGGAGGCATTTAAAAACATACTAACAGAAATCTATCGGATTGTGTCACAGAAACAGATGGTCGACAGGCCCGGGCACGATGAGTCTCCTGGCAATAACGTAGTGGACATCAGCGTGCCGCCCACTACTGACGGGTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCAACACCCCCTCCCCTGCTCCTACCCGACCCTTGGGTTTCAGTTCCCCTCTATTTATCTCCGCTTTCGCTCCTGTGTGTTGTGCTACAGCTACGGCTCTCTCCTCTTTTTACCTCGTCGTGATTACCACGCTAATTCTAGACGTCCCATAGAAGCGTGAATCTCTAGGTAACATTCCTTTTCCTTTCTTTGGGGGGATCTTTGTTTGTAtgtccctttttttctttttttttttttctttactatcATCAACCATCTGG

Function

symbol description
rab11ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including caudal vein plexus; gut; nervous system; pectoral fin bud; and pronephric duct. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0045054 constitutive secretory pathway biological_process
GO:0045055 regulated exocytosis biological_process
GO:0005768 endosome cellular_component
GO:0055037 recycling endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2860 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including caudal vein plexus; gut; nervous system; pectoral fin bud; and pronephric duct. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000041878

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040361 False 1804 mRNA 0.44 5 17499905 17506843
TCONS_00040362 False 788 mRNA 0.50 6 17499917 17505793
TCONS_00040363 True 726 lncRNA 0.47 2 17503508 17506038

Neighbor

gene id symbol gene type direction distance location
XLOC_020332 rabgap1l coding upstream 45448 17312111 ~ 17454457 (+)
XLOC_020333 gpr52 coding upstream 139447 17359346 ~ 17360458 (+)
XLOC_020331 FAM163A coding upstream 199288 17286841 ~ 17300617 (+)
XLOC_020330 tdrd5 coding upstream 219052 17261801 ~ 17280853 (+)
XLOC_020329 axdnd1 coding upstream 249083 17237219 ~ 17250822 (+)
XLOC_020335 march2 coding downstream 2579 17509422 ~ 17521293 (+)
XLOC_020336 hnrnpm coding downstream 24177 17531020 ~ 17544141 (+)
XLOC_020337 polr2eb coding downstream 99745 17606588 ~ 17611582 (+)
XLOC_020338 tm6sf2 coding downstream 277571 17784414 ~ 17823608 (+)
XLOC_020339 BX908731.2 coding downstream 317616 17824459 ~ 17824573 (+)
XLOC_020324 NA non-coding upstream 688544 16810284 ~ 16811361 (+)
XLOC_020322 BX322568.1 non-coding upstream 860480 16639310 ~ 16639425 (+)
XLOC_020313 CR751228.1 non-coding upstream 1222280 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 1562637 15787981 ~ 15937268 (+)
XLOC_020306 BX323550.1 non-coding upstream 1765062 15732967 ~ 15734843 (+)
XLOC_020344 NA non-coding downstream 736915 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 784631 18291474 ~ 18291797 (+)
XLOC_020351 NA non-coding downstream 1053500 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 1730188 19237031 ~ 19238226 (+)

Expression


Co-expression Network