XLOC_020335 (march2)


Basic Information

Item Value
gene id XLOC_020335
gene name march2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17509422 ~ 17521293 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040364
ACACTGCGTCGGTAGGAGGCCGAGCCGAGTCGTTTGCTGAACGGATCAAACCCAAAACAAGCGTTGTAATTTTACCTTATCACCAATCAACAAGCGCCACCATTAAACGGATTTCACCCTCAATAACATAACCTGAGCATGGAGGAGCAGAAGTTGTAGGGTCTTTGTGGCTTGAGGTGTGGGAGCGAGGCTGCTCCCTGATTCCCCCGGTGGTCCCCTGCCCCCCGCCCTCCTGGACGGCCCCGAAATGACCACAGGGGAGTGTTGCCACCTCCCAGGCTCCCTGTGTGACTGCACTGGCAACGCTGCCCTGTCAAAAACCGTGGAGGAGGCTGACAACCGCCGGGCCCAGTACGTCACCCAGGTCACGGCCAAAGATGGACGCTTACTATCTACTGTTATCAAAGCCCTGGGCACCCAGAGTGATCGGCCAATTTGTCGGATCTGCCACGAGGGTCAAGACGTGTGCAACAGCGAGGGTCTCCTGTCCCCGTGCGACTGCACTGGCACGCTGGGCACGGTCCACAAGAGCTGCCTGGAGAAGTGGCTTTCATCATCAAACACCAGCTACTGTGAGCTGTGCCACACGGAGTTTACCATTGAGCGCCGGCCTCGACCCCTCACAGAGTGGCTCAGGGACCCAGGCCCCCGGAACGAGAAGCGCACCCTCTTCTGTGACATGGTGTGCTTTCTGTTTATAACACCCCTGGCAGCCATTTCAGGCTGGCTGTGTCTACGGGGTGCACAAGACCACCTGCACTTCAACAGTCGTCTGGAAGCGGTTGGACTCATCGCTCTGACCATCGCACTCTTCACCATCTACGTCCTCTGGACTCTGGTCTCATTCCGCTACCACTGTCAGTTGTACTCGGAATGGAGACGAACCAATCAGAAAGTCCGTTTGCTCATTCCCGACACCAAGGGTGCGCACTCAACCCAGCATTCCTTGCTTTCCACAAAGCTGCTGAAAAAGACAGCAGATGAGACCATAGTATGAGAGATGTGGTGCGGGGGAACGAGGAACAAGATGGTGGTATTAGCGTGCTATAGGTTCTTGACGCAGCGTCGTCAATTCGAGCCGCAGCACTTTTGGATGCATTCTTTTCTATTTAATCCTTTTTATCTAAATATGTGAGCACTTCATTTGATTTTCACCCGTCgattttaatgttttctttttgagCCTTTATAAGTGTGTCATTTGAAgaatccatttatttattaggggGCTCCAACAGCCAGGCTGAGGCCCCCCCCCCATACCATTCAGTATGCATTGTATTTGAAACAATCGGAAATCTTACTTATGTGTATAGACGATTCCTTTGAGCACAGCGCCGAGGGATTGCGACTCAAGTACATATGCGGCTGCTGAAGCTTAAAACCAAACCTTTCTTTCGTTTTCGATGTATCGTTTTTCTACTCATCTACCTTCAAGTACTTTCCATCTCAACCAGACGGAGTCGCTGCTGAGTGATTCTCTTAGTCATTGCGACTCATATACGATTTAGTCGagatataaatgtgtaaatatatacacacttaaGCAAACGAGTAAGCTCTAAGCTTCGATTAACATGGGTATTACAGGGCCATCGTGCTTTGTGGCCCGGGAGATGAATGTGGAGGCTGGTGTATTTCTGCAGCGGCGTAGCGAACATTTCAAAAAAGGTTTacgaatattaaaaaaacaaaaagaaa

Function

symbol description
march2 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasmic vesicle and endoplasmic reticulum. Orthologous to human MARCHF2 (membrane associated ring-CH-type finger 2).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006897 endocytosis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050208-777 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasmic vesicle and endoplasmic reticulum. Orthologous to human MARCHF2 (membrane associated ring-CH-type finger 2).

Ensembl:

ensembl_id ENSDARG00000061738

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040364 True 1701 mRNA 0.50 5 17509422 17521293

Neighbor

gene id symbol gene type direction distance location
XLOC_020334 rab11ba coding upstream 2579 17499905 ~ 17506843 (+)
XLOC_020332 rabgap1l coding upstream 54965 17312111 ~ 17454457 (+)
XLOC_020333 gpr52 coding upstream 148964 17359346 ~ 17360458 (+)
XLOC_020331 FAM163A coding upstream 208805 17286841 ~ 17300617 (+)
XLOC_020330 tdrd5 coding upstream 228569 17261801 ~ 17280853 (+)
XLOC_020336 hnrnpm coding downstream 9727 17531020 ~ 17544141 (+)
XLOC_020337 polr2eb coding downstream 85295 17606588 ~ 17611582 (+)
XLOC_020338 tm6sf2 coding downstream 263121 17784414 ~ 17823608 (+)
XLOC_020339 BX908731.2 coding downstream 303166 17824459 ~ 17824573 (+)
XLOC_020340 hapln4 coding downstream 306974 17828267 ~ 17831253 (+)
XLOC_020324 NA non-coding upstream 698061 16810284 ~ 16811361 (+)
XLOC_020322 BX322568.1 non-coding upstream 869997 16639310 ~ 16639425 (+)
XLOC_020313 CR751228.1 non-coding upstream 1231797 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 1572154 15787981 ~ 15937268 (+)
XLOC_020306 BX323550.1 non-coding upstream 1774579 15732967 ~ 15734843 (+)
XLOC_020344 NA non-coding downstream 722465 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 770181 18291474 ~ 18291797 (+)
XLOC_020351 NA non-coding downstream 1039050 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 1715738 19237031 ~ 19238226 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding CI01000030 null 2104123 ~ 2109882 (+)
grasscarp (Ctenopharyngodon idella) G197103 NA non-coding CI01000046 null 4267478 ~ 4267872 (+)
rainbow trout (Oncorhynchus mykiss) G197690 NA non-coding NC_048566.1 CM023220.2 86185317 ~ 86185651 (-)