XLOC_020337 (polr2eb)


Basic Information

Item Value
gene id XLOC_020337
gene name polr2eb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 17606588 ~ 17611582 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040371
TTGACACCGGATATTTGAACTGTTCGATTGAATCTATATTCAAACGATTCAAACCCTACGCACTTCTCAAATGCTATACAACTCTCTTTCCTTCCTTGTTCGtttacataaaacaaaatcaGTATTTAAAGAAAGCAATAGCTGTGATATTGCTTAGAAGTTGTGATACTTCTAAGCAACGCGCACTGTTTTTTGTACGAAATAAAGCTgcgcattGTATCTACGCTGTGGCGTAACGTCTGACGTCATTTACTCGCGCCAGCAACGGGAAACAAACGTGGAGAAGAAGCATCACATTAGCGGATTGTTTTGATCGTCAAAATTTGGTATTAATCATATTTATAGCGCAGTATGGATGACGAGGAAGAGACATACAGACTATGGAAAATTAGAAAAACTATAATGCAGCTTTGTCACGATCGCGGATATTTGGTGACGCAGGATGAATTGGACCAGACTCTTGATGAATTCAGGAGTCAGTTTGGAGATAAACCGAGCGAGGGTCGACCACGACGAAATGACCTGACAGTCCTGGTGGCCCACAATGACGAC
>TCONS_00040372
TCTGACGTCATTTACTCGCGCCAGCAACGGGAAACAAACGTGGAGAAGAAGCATCACATTAGCGGATTGTTTTGATCGTCAAAATTTGGTATTAATCATATTTATAGCGCAGTATGGATGACGAGGAAGAGACATACAGACTATGGAAAATTAGAAAAACTATAATGCAGCTTTGTCACGATCGCGGATATTTGGTGACGCAGGATGAATTGGACCAGACTCTTGATGAATTCAGGAGTCAGTTTGGAGATAAACCGAGCGAGGGTCGACCACGACGAAATGACCTGACAGTCCTGGTGGCCCACAATGACGACCCGACCGACCAGATGTTTGTGTTCTTCCCGGAGGAACCAAAGGTTGGCATCAAAACCATAAAGATGTATTGCCAGCGCATGCAGGAGGAAAACATCACCCGCGCCATCATTGTAGTACAGATGGGCATGACACCCTCCGCCAAACAGTCTCTGGTCGACATGGCACCAAAGTACATACTGGAGCAGTTTCTTCAGCAGGAGCTTCTAATCAACATTACAGAACACGAGCTTGTTCCAGAGCACATAGTTATGACAAAAGAAGAAGTGACTGAGTTGCTGGCGCGGTATAAGCTAAAGGAAAGCCAACTTCCCAGAATTCAAGCTGGGGATCCCGTTGCACGTTACTTTGGCTTAAAAAGAGGCCAGgttGTTAAGATCATCAGACCGAGTGAAACGGCTGGCCGATACATCACATACAGATTGGTCCAGTAATGTTGGTTTCTTTTCCCAGCTGCTGAAATTGAACACCTTCAGTTTgtctttttacaatttttaactaATAAAATATGTTTC
>TCONS_00040373
AAGGTTGGCATCAAAACCATAAAGATGTATTGCCAGCGCATGCAGGAGGAAAACATCACCCGCGCCATCATTGTAGTACAGATGGGCATGACACCCTCCGCCAAACAGTCTCTGGTCGACATGGCACCAAAGTACATACTGGAGCAGTTTCTTCAGCAGGAGCTTCTAATCAACATTACAGAACACGAGCTTGTTCCAGAGCACATAGTTATGACAAAAGAAGAAGTGACTGAGTTGCTGGCGCGGTAGTATCCTTTCATGAAAGATGCTTAAGTTTACAGcagtgttattttcatatttctaTGGTTTAGCTCAACTTTGTGTATTATATATGTTTAACTCCAGTTGGATAGTTCACAGTACATGTAGGTCACCTTAACCAGCGCTTCTCCAGTAAGCTAAAGGAAAGCCAACTTCCCAGAATTCAAGCTGGGGATCCCGTTGCACGTTACTTTGGCTTAAAAAGAGGCCAGgttGTTAAGATCATCAGACCGAGTGAAACGGCTGGCCGATACATCACATACAGATTGGTCCAGTAATGTTGGTTTCTTTTCCCAGCTGCTGAAATTGAACACCTTCAGTTTgtctttttacaatttttaactaATAAAATATGTTTCTGTT

Function

symbol description
polr2eb Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-83 Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).

Ensembl:

ensembl_id ENSDARG00000026183

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040371 False 552 processed_transcript 0.41 3 17606588 17607337
TCONS_00040372 False 827 mRNA 0.45 8 17606863 17611578
TCONS_00040373 True 624 lncRNA 0.42 5 17607753 17611582

Neighbor

gene id symbol gene type direction distance location
XLOC_020336 hnrnpm coding upstream 62447 17531020 ~ 17544141 (+)
XLOC_020335 march2 coding upstream 85295 17509422 ~ 17521293 (+)
XLOC_020334 rab11ba coding upstream 99745 17499905 ~ 17506843 (+)
XLOC_020332 rabgap1l coding upstream 152131 17312111 ~ 17454457 (+)
XLOC_020333 gpr52 coding upstream 246130 17359346 ~ 17360458 (+)
XLOC_020338 tm6sf2 coding downstream 172832 17784414 ~ 17823608 (+)
XLOC_020339 BX908731.2 coding downstream 212877 17824459 ~ 17824573 (+)
XLOC_020340 hapln4 coding downstream 216685 17828267 ~ 17831253 (+)
XLOC_020341 nr2c2ap coding downstream 544418 18156000 ~ 18160269 (+)
XLOC_020342 borcs8 coding downstream 555017 18166599 ~ 18175378 (+)
XLOC_020324 NA non-coding upstream 795227 16810284 ~ 16811361 (+)
XLOC_020322 BX322568.1 non-coding upstream 967163 16639310 ~ 16639425 (+)
XLOC_020313 CR751228.1 non-coding upstream 1328963 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 1669320 15787981 ~ 15937268 (+)
XLOC_020306 BX323550.1 non-coding upstream 1871745 15732967 ~ 15734843 (+)
XLOC_020344 NA non-coding downstream 632176 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding downstream 679892 18291474 ~ 18291797 (+)
XLOC_020351 NA non-coding downstream 948761 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 1625449 19237031 ~ 19238226 (+)

Expression


Co-expression Network