G89984 (LOC106577100)


Basic Information

Item Value
gene id G89984
gene name LOC106577100
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80052950 ~ 80058335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU99080
GGTTGAGCATGTATCGGAGCATGAAATCCAGCAGGAAGGACTTCCCCTTACGGAAGGCCCCAGCcactgacaccaccaccacattaaggtctctgacatcctcctGCAGTAAGAGCTTCTCCAGAGCCGCCGTGTCCAGCTCAAATTTGTGGTCGTCTTCGTGAGCCAGGACAATCTGGATGGGCCGAGccttctcctccaccaccacctcttctACAGGTTGCTCCTTGACAGGACTCTGATCGGCAGCAGTCAGCTCTGGGGCCTGTTCCCACTCCTCGTCTGTCTCGCTATCCGCCTCTGCCCGAGGCGCCATCCTGGGAGGAGGCTTCCGATCTGGCAGGGACAGAGGAACATCTTCCACACCACCCgcaccTCGTCAAAGACGTGTCTTTTGCGGTTTTGTTCGAAATGATTCCGTTTCCTCAGCCCGCTAACCTCGGCCATCTTGTCCTATTTAAAATAATCCCACGTAGTTGCGTCAAAGAacccttcttcttctttgggattgtg

Function

NR:

description
atlastin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99080 True 513 lncRNA 0.34 2 80052950 80058335

Neighbor

gene id symbol gene type direction distance location
slc29a1a LOC106577101 coding upstream 19173 79956334 ~ 80033777 (+)
vip LOC106577104 coding upstream 124041 79924696 ~ 79928909 (+)
bcl2l11 bcl2l11 coding upstream 270703 79766233 ~ 79782247 (+)
acoxl acoxl coding upstream 287591 79720751 ~ 79765359 (+)
LOC110530167 st6b1 coding upstream 335004 79708170 ~ 79717946 (+)
arhgef33 LOC106577154 coding downstream 189764 80248099 ~ 80267460 (+)
LOC110530346 LOC106577158 coding downstream 301481 80359816 ~ 80364026 (+)
LOC110530352 LOC106577159 coding downstream 325231 80383566 ~ 80386413 (+)
LOC110532748 LOC106577167 coding downstream 956370 81014705 ~ 81056605 (+)
LOC110530417 LOC106577168 coding downstream 998660 81056995 ~ 81078956 (+)
G89973 NA non-coding upstream 31962 80020701 ~ 80020988 (+)
G89889 NA non-coding upstream 78425 79885566 ~ 79974525 (+)
G89893 NA non-coding upstream 161207 79888583 ~ 79891743 (+)
G89891 NA non-coding upstream 162905 79886679 ~ 79890045 (+)
G89865 NA non-coding upstream 200686 79847107 ~ 79852264 (+)
G90055 NA non-coding downstream 119269 80177604 ~ 80178075 (+)
G90446 NA non-coding downstream 159377 80217712 ~ 80218052 (+)
G90527 NA non-coding downstream 296984 80355319 ~ 80355724 (+)
G90528 NA non-coding downstream 299044 80357379 ~ 80357600 (+)
G89667 NA other upstream 503299 79549017 ~ 79549651 (+)
G87159 NA other upstream 2482480 77570015 ~ 77570470 (+)
G86614 NA other upstream 2928523 77123935 ~ 77124427 (+)
G86019 NA other upstream 3417014 76631745 ~ 76635936 (+)
G91064 NA other downstream 706779 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 1479996 81538331 ~ 81541400 (+)
G91779 NA other downstream 1819204 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 1847797 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 2070309 82128619 ~ 82163498 (+)

Expression


Co-expression Network