G90446


Basic Information

Item Value
gene id G90446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80217712 ~ 80218052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU99613
cacccaaaggacatccagccaacttgacacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacacttttgacaccttgtagagtccatgcccaaacaaattgaggctgttctgagggcaaaaggggtagggggttcctaatgtttggtgacTTATAAGGAGGGTATGGTTACATTTTATTTGCTGTGTTAAACCTAACCTTTGGAGTGACTTCAATAGCAACAGTGAATATATTTAGTTAAGATGTTTCTCAATAATCATTCTCACTATATcacattggtagtagtcagtAACAAATATAAAAGATGGGCTTGGTTAAAACGCTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99613 True 341 lncRNA 0.41 1 80217712 80218052

Neighbor

gene id symbol gene type direction distance location
slc29a1a LOC106577101 coding upstream 183935 79956334 ~ 80033777 (+)
vip LOC106577104 coding upstream 288803 79924696 ~ 79928909 (+)
bcl2l11 bcl2l11 coding upstream 435465 79766233 ~ 79782247 (+)
acoxl acoxl coding upstream 452353 79720751 ~ 79765359 (+)
LOC110530167 st6b1 coding upstream 499766 79708170 ~ 79717946 (+)
arhgef33 LOC106577154 coding downstream 30047 80248099 ~ 80267460 (+)
LOC110530346 LOC106577158 coding downstream 141764 80359816 ~ 80364026 (+)
LOC110530352 LOC106577159 coding downstream 165514 80383566 ~ 80386413 (+)
LOC110532748 LOC106577167 coding downstream 796653 81014705 ~ 81056605 (+)
LOC110530417 LOC106577168 coding downstream 838943 81056995 ~ 81078956 (+)
G90055 NA non-coding upstream 39637 80177604 ~ 80178075 (+)
G89984 LOC106577100 non-coding upstream 159377 80052950 ~ 80058335 (+)
G89973 NA non-coding upstream 196724 80020701 ~ 80020988 (+)
G89889 NA non-coding upstream 243187 79885566 ~ 79974525 (+)
G90527 NA non-coding downstream 137267 80355319 ~ 80355724 (+)
G90528 NA non-coding downstream 139327 80357379 ~ 80357600 (+)
G90542 NA non-coding downstream 185463 80403515 ~ 80408049 (+)
G90556 NA non-coding downstream 218830 80436882 ~ 80439031 (+)
G89667 NA other upstream 668061 79549017 ~ 79549651 (+)
G87159 NA other upstream 2647242 77570015 ~ 77570470 (+)
G86614 NA other upstream 3093285 77123935 ~ 77124427 (+)
G86019 NA other upstream 3581776 76631745 ~ 76635936 (+)
G91064 NA other downstream 547062 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 1320279 81538331 ~ 81541400 (+)
G91779 NA other downstream 1659487 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 1688080 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 1910592 82128619 ~ 82163498 (+)

Expression


Co-expression Network