G90556


Basic Information

Item Value
gene id G90556
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80436882 ~ 80439031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU99749
tatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacagcactatcaacaaggcaggtcctacaggccctagtttctacattcttaacagcactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactat
>TU99750
tatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacagcactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacagaccctagttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99749 False 306 lncRNA 0.45 3 80436882 80439031
TU99750 True 336 lncRNA 0.46 2 80436882 80438806

Neighbor

gene id symbol gene type direction distance location
LOC110530352 LOC106577159 coding upstream 50469 80383566 ~ 80386413 (+)
LOC110530346 LOC106577158 coding upstream 72856 80359816 ~ 80364026 (+)
arhgef33 LOC106577154 coding upstream 173148 80248099 ~ 80267460 (+)
slc29a1a LOC106577101 coding upstream 403105 79956334 ~ 80033777 (+)
vip LOC106577104 coding upstream 507973 79924696 ~ 79928909 (+)
LOC110532748 LOC106577167 coding downstream 575674 81014705 ~ 81056605 (+)
LOC110530417 LOC106577168 coding downstream 617964 81056995 ~ 81078956 (+)
zcchc24 LOC106577169 coding downstream 645003 81084034 ~ 81175099 (+)
LOC118966718 NA coding downstream 892515 81331546 ~ 81332112 (+)
ipyr ipyr coding downstream 1181189 81620220 ~ 81635022 (+)
G90542 NA non-coding upstream 28833 80403515 ~ 80408049 (+)
G90528 NA non-coding upstream 79282 80357379 ~ 80357600 (+)
G90527 NA non-coding upstream 81158 80355319 ~ 80355724 (+)
G90446 NA non-coding upstream 218830 80217712 ~ 80218052 (+)
G90671 NA non-coding downstream 214874 80653905 ~ 80757902 (+)
G90724 NA non-coding downstream 289492 80728523 ~ 80754315 (+)
G91051 NA non-coding downstream 318964 80757995 ~ 80758220 (+)
G91068 NA non-coding downstream 329841 80768872 ~ 80769195 (+)
G91126 NA non-coding downstream 371823 80810854 ~ 80811062 (+)
acoxl acoxl other upstream 671523 79720751 ~ 79765359 (+)
G89667 NA other upstream 887231 79549017 ~ 79549651 (+)
G87159 NA other upstream 2866412 77570015 ~ 77570470 (+)
G86614 NA other upstream 3312455 77123935 ~ 77124427 (+)
G86019 NA other upstream 3800946 76631745 ~ 76635936 (+)
G91064 NA other downstream 326083 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 1099300 81538331 ~ 81541400 (+)
G91779 NA other downstream 1438508 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 1467101 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 1689613 82128619 ~ 82163498 (+)

Expression


Co-expression Network