XLOC_020342 (borcs8)


Basic Information

Item Value
gene id XLOC_020342
gene name borcs8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18166599 ~ 18175378 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040381
CCGGATGATTTCTTGGGAGCACAATCTTAGGGAAATCAGTAGTGTTTTGATATTACAGAAGCAAAGTCGTATCaggcgtttatttatttatttttaaataataatggaGGATCAAGAAATGCAGTTGAAAGTAAAAAGAGTGACTGATAAATTCACGGAGAGTATGTATGTTTTAGCCAATGAACCGTCAATAGCCCTTTATAGGTTACAAGAACATGTCAGGAGATCCTTGCCAGAGCTCGTGCAACATAAGACATGCAGAGCTGGGAGGAACAGAGTCAAGGAGCAATTTACACAGTCGAATATGCATGCAGtgcgGTTAAAAGTATGACAAACAGTAGTCTCTATTTCAAGAACATAGACGGTCTGCTCCGGCAAGCCATTTCTCTGAAGGAACAGATCAGCAGCTCGCAGGGACGAAGAAAAAGAGCTTTGGATCATGGTATGCATAAGGATGGAGGAGAAAAACACAGCTCTGGGATGTGAAAATATGCACTGATGAAAGCCTGGATGAATCTGTGTGCCATTATCACTTGGTGCCACTGACTTTTATGGTTGATAGTCTACAGTATGGAAGCCCATTTTTCACCTCaagattacaaaataaaagtcattttgacattaaaatatgaaacaaatttGACATTTGTGAGATTTATTGTAACATGTTAACATGAagtcacattatttaaaatataatgtcaTAATTGTGAGATTTACAGTCTCATTGTAACATGAAATCATAATATTTAATGTCATAATTGTGAGATTTTTAGTTGGTTAACTTTATTTGTCCTTTAttttggcatatatatatatatatatatatatatatatatatata
>TCONS_00040382
CAAAGTCGTATCaggcgtttatttatttatttttaaataataatggaGGATCAAGAAATGCAGTTGAAAGTAAAAAGAGTGACTGATAAATTCACGGAGAGTATGTATGTTTTAGCCAATGAACCGTCAATAGCCCTTTATAGGTTACAAGAACATGTCAGGAGATCCTTGCCAGAGCTCGTGCAACATAAGaCAGACATGCAGAGCTGGGAGGAACAGAGTCAAGGAGCAATTTACACAGTCGAATATGCATGCAGtgcgGTTAAAAGTATGACAAACAGTAGTCTCTATTTCAAGAACATAGACGGTCTGCTCCGGCAAGCCATTTCTCTGAAGGAACAGATCAGCAGCTCGCAGGGACGAAGTGCTGTGATTAATCCAAACGAAACACCCGCACACACTTCAGTCACACCTTGAATCATGGAAATCATTTTAACAGAAAAAGAGCTTTGGATCATGGTATGCATAAGGATGGAGGAGAAAAACACAGCTCTGGGATGTGAAAATATGCACTGATGAAAGCCTGGATGAATCTGTGTGCCATTATCACTTGGTGCCACTGACTTTTATGGTTGATAGTCTACAGTATGGAAGCCCATTTTTCACCTCaagattacaaaataaaagtcattttgacattaaaatatg

Function

symbol description
borcs8 Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Is expressed in brain and pharyngeal arch. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8).

GO:

id name namespace
GO:0099078 BORC complex cellular_component
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050208-757 Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Is expressed in brain and pharyngeal arch. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8).

Ensembl:

ensembl_id ENSDARG00000071339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040381 False 844 nonsense_mediated_decay 0.35 5 18166599 18175378
TCONS_00040382 True 648 mRNA 0.40 6 18166660 18175165

Neighbor

gene id symbol gene type direction distance location
XLOC_020341 nr2c2ap coding upstream 6330 18156000 ~ 18160269 (+)
XLOC_020340 hapln4 coding upstream 335346 17828267 ~ 17831253 (+)
XLOC_020339 BX908731.2 coding upstream 342026 17824459 ~ 17824573 (+)
XLOC_020338 tm6sf2 coding upstream 342991 17784414 ~ 17823608 (+)
XLOC_020337 polr2eb coding upstream 555017 17606588 ~ 17611582 (+)
XLOC_020343 mef2b coding downstream 12479 18187857 ~ 18216488 (+)
XLOC_020344 NA coding downstream 68380 18243758 ~ 18304288 (+)
XLOC_020345 NA coding downstream 116096 18291474 ~ 18291797 (+)
XLOC_020346 gatad2ab coding downstream 140112 18315490 ~ 18387919 (+)
XLOC_020347 yjefn3 coding downstream 213893 18389271 ~ 18464654 (+)
XLOC_020324 NA non-coding upstream 1355238 16810284 ~ 16811361 (+)
XLOC_020322 BX322568.1 non-coding upstream 1527174 16639310 ~ 16639425 (+)
XLOC_020313 CR751228.1 non-coding upstream 1888974 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 2229331 15787981 ~ 15937268 (+)
XLOC_020351 NA non-coding downstream 384965 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 1061653 19237031 ~ 19238226 (+)
XLOC_020380 BX510913.2 non-coding downstream 1596320 19771698 ~ 19771812 (+)

Expression


Co-expression Network