XLOC_020345


Basic Information

Item Value
gene id XLOC_020345
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18291474 ~ 18291797 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041894
gcaactggaagggcatccgctgtgtaaaacatatgctggataagttggccactcattcctctgtggtgaaccctgatgaacaaagggactaagccgaaggagaatgaatgaatgtctgaacAAAGCGTTTATTTAAAGAGCTGTTCACACCAAGAACGATAACGATAACCATCACATTTTAGCAGTCACTCCGATtcagtatataaaatataaacgcAACATATTTGACAACTTTAATTTTTCAGCTGATGAATGATTAAAACATTCACTGCAGTTCAGAATAGACTCAAATTTAAAGAGCCTAGCCTGCAAAGACTCCCTCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041894 True 324 lncRNA 0.39 1 18291474 18291797

Neighbor

gene id symbol gene type direction distance location
XLOC_020343 mef2b coding upstream 74986 18187857 ~ 18216488 (+)
XLOC_020342 borcs8 coding upstream 116096 18166599 ~ 18175378 (+)
XLOC_020341 nr2c2ap coding upstream 131205 18156000 ~ 18160269 (+)
XLOC_020340 hapln4 coding upstream 460221 17828267 ~ 17831253 (+)
XLOC_020339 BX908731.2 coding upstream 466901 17824459 ~ 17824573 (+)
XLOC_020346 gatad2ab coding downstream 23693 18315490 ~ 18387919 (+)
XLOC_020347 yjefn3 coding downstream 97474 18389271 ~ 18464654 (+)
XLOC_020348 cilp2 coding downstream 177207 18469004 ~ 18485470 (+)
XLOC_020349 BX649279.1 coding downstream 205962 18497759 ~ 18498645 (+)
XLOC_020350 si:ch211-212d10.1 coding downstream 238598 18530395 ~ 18537415 (+)
XLOC_020324 NA non-coding upstream 1480113 16810284 ~ 16811361 (+)
XLOC_020322 BX322568.1 non-coding upstream 1652049 16639310 ~ 16639425 (+)
XLOC_020313 CR751228.1 non-coding upstream 2013849 16277498 ~ 16277625 (+)
XLOC_020308 BX323550.5 non-coding upstream 2354206 15787981 ~ 15937268 (+)
XLOC_020351 NA non-coding downstream 268546 18560343 ~ 18596258 (+)
XLOC_020360 BX927243.1 non-coding downstream 945234 19237031 ~ 19238226 (+)
XLOC_020380 BX510913.2 non-coding downstream 1479901 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 1501322 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 1547478 19839275 ~ 19839592 (+)

Expression


Co-expression Network