G91938 (LOC106577167)


Basic Information

Item Value
gene id G91938
gene name LOC106577167
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81044816 ~ 81045797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU101246
ttcactGTTTGGAACCTTGCCCTCAGatccactctccctcccctcttcactGTCTCTGTTTGGAACCTCGCCCTCAGATCcactttccctctccttctcaaaGTCTGAACGGTCCACATCGGATCtgctctccctgctcctctctttctctccatccaagacatcctgctctttctcttcctccgAGTGGTTCTCCTGTTCGTCTGTGGGCTCCTCAACCAGCCCAGGGAGCAGCAGCCTGAGCTGCAGAGTCCCTGAGGAGCTCATCACATTATGGTGGGTAGTCTCGGCAATATGTACAAATGTCCGCTCTACTTTGGTGAAAGGAGGGGAGGTGCTGGTGGGAGTAACAACATTGGGCGCCACATTGACCAGCATGGCGGAGATGGCCGTCGAAGGCGGTTTGGGCTCGGACTTCAACTGCGAGAATAAAGTACCTGGCTCAGACACGTCCAGCAGGCTTCCCAGAGGTCCCAGAGCTCTCTCGCACTGGGGTGTGATGGCTGCCAGCGTCCCCTGGTGACTCCCGGCATCGTCCGGGGGCAGATCACCCACCACGGCAAGGGACCTCCTCACGTCTCCAGGGGAGAAGAGCACCAGGGTCTTGGAGCCTTCCTCCAGCTCCAGGTCCGGATCACCACCAAACCCCACTCCTGAAGAGGCCCGGCGAGGGTATTCCCGAGGAGGCTCGTCTGCAAGAAGAGTAGAGGGAGCTCCATCATCACCCTCTTGGCTGTGCTCGCTGCTCTTGGGGCTCCCATCACCGCTGTACACTGCCCCAGCCCCGACCTCAGCGGCATCCACATTCCCATCCTGATCCTGCTCAACACATGTTCTGGAATCAACCTCAAAGGAGGTTTGGAGTGGTGGAAGGGTGGCGGCGCCGGTGAGCATGGCAGAGAGGAAGTCCACCCGTCGAAAGCGATGCTGGGCCAGCGCGGGTAGtttaggcctctctctctctacaccctggAAGTTGAGG

Function

NR:

description
tau-tubulin kinase 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101246 True 982 lncRNA 0.47 1 81044816 81045797

Neighbor

gene id symbol gene type direction distance location
LOC110530390 LOC106577181 coding downstream 53102 80975992 ~ 80991714 (-)
nphp1 LOC106577164 coding downstream 78173 80940215 ~ 80966643 (-)
LOC118965579 LOC106577163 coding downstream 122459 80919948 ~ 80922357 (-)
LOC110530369 LOC106577163 coding downstream 139037 80903337 ~ 80905779 (-)
slc8a1b LOC106577160 coding downstream 397676 80409477 ~ 80647140 (-)
ppifa LOC106577170 coding upstream 123005 81168802 ~ 81174063 (-)
LOC110532756 LOC106577174 coding upstream 130048 81175845 ~ 81449471 (-)
LOC118965609 NA coding upstream 419753 81465550 ~ 81532357 (-)
rps24 LOC106577218 coding upstream 492554 81538351 ~ 81542584 (-)
qrfpra LOC106577227 coding upstream 499428 81545225 ~ 81557378 (-)
G91949 NA non-coding downstream 607 81041333 ~ 81044209 (-)
G91950 NA non-coding downstream 4703 81038791 ~ 81040113 (-)
G91946 NA non-coding downstream 10156 81034442 ~ 81034660 (-)
G91942 NA non-coding downstream 15797 81028674 ~ 81029019 (-)
G91939 NA non-coding downstream 21288 81023251 ~ 81023528 (-)
G91935 NA non-coding upstream 4109 81049906 ~ 81055756 (-)
G91951 NA non-coding upstream 10308 81056105 ~ 81056419 (-)
G91952 NA non-coding upstream 11068 81056865 ~ 81057248 (-)
G91953 LOC106577168 non-coding upstream 25980 81071777 ~ 81078952 (-)
G92044 NA non-coding upstream 237300 81283097 ~ 81283317 (-)
G91947 NA other downstream 8678 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 13458 81030832 ~ 81031358 (-)
G91941 NA other downstream 16204 81027908 ~ 81028612 (-)
G90382 NA other downstream 902659 80141559 ~ 80142157 (-)
LOC110530475 eif4ebp2 other upstream 561681 81607478 ~ 81629726 (-)
G92566 NA other upstream 1114610 82160407 ~ 82161743 (-)
LOC110532782 LOC106577197 other upstream 1248016 82291777 ~ 82301867 (-)
LOC100301648 LOC106577193 other upstream 1903817 82949609 ~ 83267163 (-)

Expression


Co-expression Network