G91327


Basic Information

Item Value
gene id G91327
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81160011 ~ 81164594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU100581
gtatgtgtatactatatgtatgtgtgtatgtttgtatatcAAAGTATTATtgtgtattattgtattattgtgTAACTGCTTCCACTTGTCTTTAGAAACGACTGTAGGTTGAGAGAGAGTCGTTCTTCGTTTAGTTGTAGTACAGTGATAATAACGTTGATGTTTCGTATTAAACAAGCTGTGCGTTTACATCGGCAATGAAAGTCGGGTTTAGGTATTCATCGATTTGACAAGATTTTAACATTTGCCTGTCAAAAGGCAACTATGCAATAACAGCAGTTTCTGTGATGATAAAGGCTGGATATCTAGTTTCTCTTAGCCAATATCCCCTTCATATTTAGACTCTTAAGTATTAGGTTCAATCTATTGGCAGTGCTGTAGTCTTTTTTTCCTAATTTGACAGTTTACTTCCAAACAatcattttatttttgtaatgaGTTTCTTGAAAAGTAATTCTGTCCTGCACTGTCTGTATGCAACCAATATTCTTATTAAGGACTCGACTTCAGCATTGTTATTTCTGGCGAGTATTTACAACTAATCTATTTGGTGTGGGATGCCGATAGATTGACATAGTTGATTAGAACTGCTATTTCAAATGGTATATAGAGAAGTACTCATTATACATTTCAAAGTGGTTTTATAATATCCCTATTGCAATTGCACATTTTTGCAATCATTTGTAGGACACACAACTGACCAATAGAGCTGTTGCAATCTTGTAACGCTACTTTAAGACAGATTGACCTAGAAATATAACGGTGAATCTTACTAATATCTGTTTCCAAGGGGTCAAACAAGTCACAGCAGTACATTATGTctggagaaagagatgagggatggaggtaaGATTACTATAATGGTTGGTAAAGGAGAAAGAAGTATAGAAGTGGAAATGTCTTGTAACAAAATggacatttgtatttttattagaGGACGTTTTGTAAGTGTGGTGATGGATTAAGTTTACGTTTCTGTGTGTTTGATTCCACATCCTATCATGATTTAAACGTTAAATCGTGTCTTTAATAGAAGAGACGTAACTAACCATTACCTCTGTTTACAAAAATATAGGTCTATACTTTCAACTTTATAGTTGGAGGACCTAGAGTGAAGAATATTTTTCATTCAACATTTTGTAACAGTGGGTATAGTTGTATCTTAGCAATGAAGGCTATTGACACTTTGGGAACTGTGTTATTTTGTGAGTATAGTTGAAGAGAAGTTTGCTACCACTTTCAAAGCGGAGGTGTATTTTTCAAATCACACACATTGGCTTCTCCAATATTTAGAATGTGTTTAATGGCTCTATAAAGGTTGAATTCATAgttgtatattttatattatcCGAAAAGTACTAGTGCCTTGTAAAAAGAGAATAATTATTTCGAAAAATTGGAAGGAAAGTGAATAAAGAGGAGAGTTGAACTTAGTTTGGAGGTGTAATTAACTCGTGGCTAGATGTAACTGCTAGGTGTTTTGCCAAGTCTGATGCCGGTTCAAGATGTGAATACATATGGGAAAACAACACTATTACCCATTAGCAATGAGAACTGGCTAATGTTTCCTCAACACCATTTTGTTGAGTTTGGACGCAGTAACTAAAGCATctggcaaaaacacacacactgtagttagTCTGTTGTCATGGAATCAACAACAATGTTATTTTGTAGTCAGTACACTAATGTGAATGAGGTTTGCACTAAAAGCTGTAGACCTCATCCTCGTTCTTTTAACTTTGGCCGTGATTCAATACAATTGCGGGTTATATGGTTTGTGGCCTTTAAAGGGCATTTCCGATTGAgtcgacatatgcagcgtttattGTGAATGGAATCTCCGCGAAcgagggaacattgcctttaaaagctgcAATGCCTATAACCCGCGATCGGATTTGAATCCCAGCCTTTTGCTTTTTGAGATAGTCTGTTTATGACTTGTTGATTGCTTCAACACACACAAGTATGAGCTTGGTTTGTAATCTTTCATTCAATGTGTGGATACAGAACAATACATTAAGCATAATTTGTTACAACTTGGACCATCACACTCAGTTAGTGTTAGTTACATGTATGTGGGGAGGTGAAGCCTGGTTCCAGATTTGTTGGTGCTTTCTTGCCAACCCCTATAGTCATTGGCACAGCACAATCACATCTGGAACAAGGTTACAGGATAGTAGCCTACTCATTAAATATTAGgctagaaatcaaatcaaatcaaatgttattagtcacatgagctaaatacagagaaatgcttactttacaagcccctAAACAACATCGTAGTTTAACAAATaccaataagaaataaaagtaacaagtaattaaagagcagcagtaaaataacaatagcgagactatatacaggggggtaccggtgcagagtcaatgtgcgggggcaccggttagttgaggtaatatgtacatgtaggtagaggtgtatatatagTGGTTGGGAGATGTCGCAGAGCCATTCTATGGACAttttattattatcatctgaacAAAAAGGGGCTTGGAAGGGAATTTGATGTGAATCGTGTAGGGGGTTTCATTCATTGATTACAGGTCATAGTAGATTATTATTTTCTCCCCACATAACGTTGGGATCAATTCTATATTTTCACTACAACTGAGCAGAACACTGCTGCTATCCAAACATTACCATATATTTGGTCTAGGCTTTATTTGCCTCACAACAGCAGTGTATCAGTACATGTTTCCATTAGCTTGGGTATTAGCCAACTAAACCAAAAGTGCTAATACCGATCCAAATCGTTACACAGTAGGCTTCTGTAGGCTTCTGACTTTTAAGGAATACAATGATAAGAATATCCTTAAGAATATAAGGAAAAAATCAGCTGAGATATTTTTGGTCTGATTCCAACCAGACAAGTTTGTGAAGAAGAAGCCATGTGTTTGAGATGGCAAAATAAGAGCTAATGGAAGCAGTTCATACATTGTGTTATGCATTttaaacatacagtatacaaatACTTTTTCAGATGTGTTTTTTGTCCTGAATTTACATATACTTGACTTTTCTAGATCATTTTCAGTATGGATTTGTTATTTTCTATGTAAGATGTGTATTTTGAAAAAAACTTTATAGATGTTACATTTTCTAAGCAATTTGCTAAAGAAAACAACCCAAGAGTTATTTTTCCCAGAAAAATATATTTAGCAAGTGACTGTTTTATGTATATATTAGATGGCCATCATCTTAAAGGATCTTAGATCTGAAATGTTATGCAGCTTTGAAGCTTTCTATGTGAAAAAGGGCCTATATAAAGCTTTGAGTTTTTCATTGATGTTTTACATTGATCTGAGGGGTTTATCCTACAGAAATATTTATGGAAAGAGTTTTTACAACACTTTTTTTGTATAAAATACTCAACAAAGTTATACTAAGAAGGAAATATTGATGTCTACATAGGTTACTATTAAAAAAAGTTGGTACATAATTATTAATACCCTTTACTCAATGATAAGCCATTTAGTTTTtatgtgttttgttttgtgtttagAAATGTTATCATCAGTATTAAATAACCCAGAATGATACCCAAGTGCTTTAACTAATATGCCTATGAGTTGCCATTTGTGTCCTTTAAGTAGCATGCATTCAGGTTTTGTTATGAGTTTTACCTTATTAAGGAAATGGCAGACATAATTACCAATGTTTTGCTATTCAAGTTCTATATAATTGATTTAGATCTTACTAGGTTACGCAATAATACTGTTAACATGCAGAATACATCTTTTTGTTCTATCTTAGTGACTGATGCTCTCCACTGTATATGCACATTCAACTGTGAGTTGTAGATTGCTCAAAGCAGCTACAAGGCACTTCTCtgaaatgttatgtttttattcATAGTTTAGTACAGAGAGTGTAATTTACTTCTGTTAAGCAAGTGTGTGAGACAAAACACTATTGTAGAATTTGCATGTGCATGTGTTTTGCTTTTAAATGGAAAAATAAGTATTACTTTATGCAATGTATTTCATTTTAGCACAGTAACGTAGTTGGGCTACATCGTACGttcaccaaatggcaccctattccctttatagtgcactactttcgaccagggcccacAGAGGGCTCTGATGAAAAGCAGTACACCATGGAgaaaatagggttccatttgggacaaacaGTAATCTCTTAGCATTCTCAACAACTTCTAATTGATTGTTACTAGTCATAAAAATGTATAATTGACCGATAGTGTATACCAATTAGTATACCAATTAATACATACTGACTGAATGTGCTGTTTTAACACTTACGTGGTCAATTAGACGTTGTTTTGTTCTTTGATGTCTGTAACATTTTGAGATTGTAACACTATAGTTGAATTGGTGTGAGTGAGTTAGGATGATGACTGGGAGGTTGTTGTGGAAACAGAAAAGAACAGATCTGTTGCATCACGTCCATGAAACGGCATTCCAAAATGTGCCTTATTTCTTAGTTAGGAAAACAAAAAACGACTTTAGTGCTTTAGTACTATTAGGTGTTGTGatgaataaaataaatgttgaatTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100581 True 4564 lncRNA 0.39 2 81160011 81164594

Neighbor

gene id symbol gene type direction distance location
LOC110530417 LOC106577168 coding upstream 81055 81056995 ~ 81078956 (+)
LOC110532748 LOC106577167 coding upstream 103406 81014705 ~ 81056605 (+)
LOC110530352 LOC106577159 coding upstream 773598 80383566 ~ 80386413 (+)
LOC110530346 LOC106577158 coding upstream 795985 80359816 ~ 80364026 (+)
arhgef33 LOC106577154 coding upstream 896277 80248099 ~ 80267460 (+)
LOC118966718 NA coding downstream 166952 81331546 ~ 81332112 (+)
ipyr ipyr coding downstream 455626 81620220 ~ 81635022 (+)
LOC110530473 LOC106577216 coding downstream 470800 81635394 ~ 81641798 (+)
tysnd1 tysnd1 coding downstream 477379 81641973 ~ 81645418 (+)
LOC110530482 LOC106577211 coding downstream 610567 81775161 ~ 81777001 (+)
G91352 NA non-coding upstream 52239 81107300 ~ 81107772 (+)
G91316 NA non-coding upstream 81764 81076625 ~ 81078247 (+)
G91317 NA non-coding upstream 90539 81068763 ~ 81069472 (+)
G91313 NA non-coding upstream 123816 81035694 ~ 81036195 (+)
G91429 NA non-coding downstream 119975 81284569 ~ 81285562 (+)
G91432 NA non-coding downstream 122679 81287273 ~ 81287590 (+)
G91435 NA non-coding downstream 126091 81290685 ~ 81290919 (+)
G91438 NA non-coding downstream 128488 81293082 ~ 81293299 (+)
G91439 NA non-coding downstream 130787 81295381 ~ 81295597 (+)
G91064 NA other upstream 393856 80765114 ~ 80766155 (+)
acoxl acoxl other upstream 1394652 79720751 ~ 79765359 (+)
G89667 NA other upstream 1610360 79549017 ~ 79549651 (+)
G87159 NA other upstream 3589541 77570015 ~ 77570470 (+)
G86614 NA other upstream 4035584 77123935 ~ 77124427 (+)
G91541 LOC106591086 other downstream 373737 81538331 ~ 81541400 (+)
G91779 NA other downstream 712945 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 741538 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 964050 82128619 ~ 82163498 (+)
G92511 NA other downstream 977530 82142124 ~ 82142587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G139916 NA non-coding CM030139.1 CM030139.1 8499384 ~ 8507103 (+)