XLOC_020350 (si:ch211-212d10.1)


Basic Information

Item Value
gene id XLOC_020350
gene name si:ch211-212d10.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18530395 ~ 18537415 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040398
TGTCAACGATGAGCATCATTTGGCAAACCACTAGTCTGCTGCTACTGCTGCGTTGCTGTGCTCCAGGTTTCTGCATGCGAGATGGGATTGTTGGTGGGAAAGTGTCCATTCCACACAGTCGACCCTACATGGTCTACATTAAGGACTCAAATTCAAAATTAGCATGTGGCGGTTTTTTGATAAGAGAGGATTTTGTGCTCACAGCAGCCCACTGTAAACGAAGTCATCTAAAGGTCTATTTGGGGGTCAATGACACCCACATTTTACCTCACGGCATCGAGGTAGAAGCCACACCACATCCCAAATTCAATAATGCACCAGGCGATGACATCATGCTTCTAAAGCTTAAGACGCCGGCAACCTTGAACAAAACTGTGAATATTATCACCTGGCCAGAATGTGAGAATAAGGAAATCTCGAAAGACTGCATGGTCTTGGGTTGGGGCTGGCAGGATTATGTTGACGGGTGTCCATCAAGTGTCCTCAAAGAAGCGAATGTGACTCTGATAGACTTTAAAAAGTGTGGCACTAATTACACCCTTTGCACTAACGGATCAATTGGACCAGCAAAGGTATTTTAGATGATTGGACCAGCAAAGGGAGACTCTGGAGGTCCACTTGTTTGTGGAGATGCTGCACAGGGAATTGTGTCTTTTTACACAGAGTCATCTGGAGTATACCTCACAAGATACACTCGTATTTCTCACTACCATCAATGGATTGATCACATCATGAATAAAACTTATCAGCAGCAACTGAAGAC
>TCONS_00040399
ATGAGCATCATTTGGCAAACCACTAGTCTGCTGCTACTGCTGCGTTGCTGTGCTCCAGGTTTCTGCATGCGAGATGGGATTGTTGGTGGGAAAGTGTCCATTCCACACAGTCGACCCTACATGGTCTACATTAAGGACTCAAATTCAAAATTAGCATGTGGCGGTTTTTTGATAAGAGAGGATTTTGTGCTCACAGCAGCCCACTGTAAACGAAGTCATCTAAAGGTCTATTTGGGGGTCAATGACACCCACATTTTACCTCACGGCATCGAGGTAGAAGCCACACCACATCCCAAATTCAATAATGCACCAGGCGATGACATCATGCTTCTAAAGCTTAAGACGCCGGCAACCTTGAACAAAACTGTGAATATTATCACCTGGCCAGAATGTGAGAATAAGGAAATCTCGAAAGACTGCATGGTCTTGGGTTGGGGCTGGCAGGATTATGTTGACGGGTGTCCATCAAGTGTCCTCAAAGAAGCGAATGTGACTCTGATAGACTTTAAAAAGTGTGGCACTAATTACACCCTTTGCACTAACGGATCAATTGGACCAGCAAAGGGAGACTCTGGAGGTCCACTTGTTTGTGGAGATGCTGCACAGGGAATTGTGTCTTTTTACACAGAGTCATCTGGAGTATACCTCACAAGATACACTCGTATTTCTCACTACCATCAATGGATTGATCACATCATGAATAAAACTTATCAGCAGCAACTGAAGACATGGAGGGGGAAGTTGTATGAACTCATTTAGTTGTTTGGTCCAGAGTTAATCATTTATGTTTGGTTTTAGTATTGCGGCATTAAACGTGATGTATATGcaagttaaaaatatatgtttatgtgAAACCATTCAACTGATTCAAAAAGCAATGTTTTttcctatttctaataactactgAGCATTTGTGCAGCTGCAGGGCACCACTGCCACCTTGTGCTGAAAGTGTATTTTATAATTGCTGAAAAAGGATGTTTAGGAAAAATGTGTAATGCAGATAACagaataaaatactataaagaaaAAACCTTACTGAATTGATTTGTCGTTTACACATGATTGTAAAGTGAATGCTCTTCTACGCCattcagcaataataataataatcttcagTCTGAAAATATCTAATTTATACTTCACCTACAGCGATGTGCtttaacacactgtaaaaccccctAAGTTAACTCAAACTGGTTGAAGAAATCGGTTGCAGCAAAccattccagtttttttttttaaatggtttgagtACTGTAAGCTTATATATTGTGTCACATACACATATATTGTGTGTTGAAATCATCAAACTTTATTAGTAACTTAAACAGATTAAGTTCAGTTTTCAAATCACTATTAGTTCAATTACCTTAAACTGGTCAATTCAGTTAAAGTCCAAAATTTATGCGTTACCATAACTCTTCTTcattgagttattttttttttatttaaagttaaactAACTTATTTCATTTAGTGATTTTCACTGTTAGGCTTTGCACTGTATCTGTACAAAAGACTAATACAAATTTGAAGTGTTGTTTTGACGTGTGTTTGAATTACAACTGACCaaaaagattattaaaattaTGTACAATACGCTTTTATTAGATAAGTACAGTTTGGGAAAGGTTTCACTATATTGTTTGAGAAAACTGTTTGcggcaaaccatttaagttttgaaacaaTATGGTTTGAGTACTGAAAACTATATGGCTATATATAGAGCCTTAaacactgtaatttttttttatcgttaaattacagaaatccataattttttttgtaatttaccatctgttattttacggtacatgtctgtaatttaacggccattatttaaatttttttccagcACCCCCCAGctgccaggaaaaaaaaaaacgtaaaattacaaaaaaaatttacagtGTACACATATTGTTTGTGTTGATAATTTGTGTTATCAAACTTTTAGGGAATTcaaaacttaaacattttaagatgAGTTATCAAATCACTATAAGCTCAACAAATTAAGTCCAAAGAACTATAAAACAACTGGAAAGGTTTGGTATTGCGACTAGTTTTAGAGATAAGTTAACATAAAAcatataattaattcattcataactcATTCATTTTGAGTTCTGCTTAATATAATCCATTCATGAGTTACCATAAGTCTTTTTCACAGAGTCAAAGTAACCTTTTAAAGTTAAACTACCTTATTTCCTTTAGTTAGGTTTTACTGTGTATTTACTCTTACAGCTCATTTCAAATGACAATGACCCAGTTTcgtcttaaaggaatagttcagccaaaattTCATTATTTCTCACCCTTTTAcctgttcaaaacctgtttgagagttctgttgaacacaaaagaagatgttccCAAAAATGCTGGAAAACtgataaccattgacttacacatTTGCTATATCTTCTGTGCTTCgctaaaatagttgggttaaaaataccccaacatataactcAACCATTTTAggaccttcccaactatgggttattttgattaaatgttttgtttttttttattattattcattctggtattactattgctaaTATTACTAGTACTACCATTCATTTTATATCAtgtctgtgtaaataaataaccaatttCAAAAATATCGAAAATGCTTTACTTTCATTACATTGTACGTCCCAGACACTTaaggatttttattcatttaatatagaTCCGCTATGAAGCGCACGTTTGTATTATCAATAATTAAGAATGCTGGTGAaccggaaaaaaaacaaaaacgactCGTAGAGgtaaataaaaactttacaaaGCAAAAACAACGTTACGtatgcatattaatacagctgttctgtgtcagctAAAGCAGGTGACTTCTGAAATTCaaaaattttaacccaactggttaagTTATTAATACATacaccaaataaaggttaaaaataacctgCCAAAGCACCATATATTTTTAACACAACGTTTTTAGAGTGTGGATGTCAGtggttttcagatttcttcaaaatttcttcttgtgtgttcaacaggaTAAAGTTTTTGAATCCCTTGAGGCAGATAAAATagtatatttaaaattttgagtgaactaccatTTAGGTCTCCTCCATCTCATCTCCATTAAATGAAACAGATTTTTTATTCTGGATTAAGTGATTTAGTTTATGAGTAATTTTATTGGAAATATACGCACAaacttgaaaaaaatgtaaatcaattcATAAAACCATTTAGGTGAGACAgcaaatgtacagttttttattattatttaacaatgtCAGGAATGTATTGTCACTGTCTTGCCTTCTTAATTCCTGTCTATTTTCTGGTCTTGTCCGTTACAAAAATGAGCTTCAATAGGGCATACAAAAGGTTAAAGCTGATCAAAAGACTTAGTCTAAAAAACGTACTCACAAACTTAAGCTGTGGCACTGCGGTTAGAGTAAGCACTATCTGGTGATCTTCTGAGAACTGCAAAATAAACATGACGGGCCTTCTGTGTGGGTAGAGGATGTGAGCTGTAATGCAAGGCAAACATTTGTGAAGTCAGGAGCTGAACACAGATCAAATTTAACAACTGTGATCCTTCAAATGCAGAATATCTGAATGATTTAGTGCACTGCACAATCTCAAAGACATGCGCCGGCTAAATCCTGATCTCTCAAATGCAATTTCATAAGTGTGGCCAGATTTCAAAGTGTCACATGCAACTTTCTATTTTGAAAGCCCACTGGTCAACCGGTCTGCTATTTTGGTGAATTATGTATTTTACGGTTTGTCATTTTATTGAACTGATGGTAGAGACACCCTGGCATCAAATCaataatttttgcaaatttaaagaTTAGATGAGTGAAATTAGTttggt

Function

symbol description
si:ch211-212d10.1 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Located in cytoplasm. Is expressed in female organism.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-355 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Located in cytoplasm. Is expressed in female organism.

Ensembl:

ensembl_id ENSDARG00000014623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040398 False 763 mRNA 0.45 5 18530395 18534262
TCONS_00040399 True 3881 mRNA 0.34 5 18530403 18537415

Neighbor

gene id symbol gene type direction distance location
XLOC_020349 BX649279.1 coding upstream 31750 18497759 ~ 18498645 (+)
XLOC_020348 cilp2 coding upstream 44925 18469004 ~ 18485470 (+)
XLOC_020347 yjefn3 coding upstream 65741 18389271 ~ 18464654 (+)
XLOC_020346 gatad2ab coding upstream 142476 18315490 ~ 18387919 (+)
XLOC_020344 NA coding upstream 226107 18243758 ~ 18304288 (+)
XLOC_020351 NA coding downstream 22928 18560343 ~ 18596258 (+)
XLOC_020352 cbarpb coding downstream 249382 18786797 ~ 18824801 (+)
XLOC_020353 fstl3 coding downstream 347556 18884971 ~ 18897231 (+)
XLOC_020354 bsg coding downstream 391997 18929412 ~ 18946453 (+)
XLOC_020355 hcn2b coding downstream 413681 18951096 ~ 19007968 (+)
XLOC_020345 NA non-coding upstream 238598 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 705822 17824459 ~ 17824573 (+)
XLOC_020324 NA non-coding upstream 1719034 16810284 ~ 16811361 (+)
XLOC_020322 BX322568.1 non-coding upstream 1890970 16639310 ~ 16639425 (+)
XLOC_020360 BX927243.1 non-coding downstream 699616 19237031 ~ 19238226 (+)
XLOC_020380 BX510913.2 non-coding downstream 1234283 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 1255704 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 1301860 19839275 ~ 19839592 (+)

Expression


Co-expression Network