XLOC_020352 (cbarpb)


Basic Information

Item Value
gene id XLOC_020352
gene name cbarpb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 18786797 ~ 18824801 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040400
TACAATTTACTCTGCTATTATATTTATGTTAAGTATGATCCATAGCCTATGTTCTTCCAAACCTGCACTGCGCCCAGGCCGCTTGGGGATGCCCGTTTCTGAAGATTTTTCACTGACTCAAATGGGGGATTACCTCATTTCCATAACATCATGAGAGGACGAGGGCGTGATAGACACTTGTGATAAGTAACGCTGTACCTCACTTTTGACGTCACAGTCTGCGCCTCTCACTGGGCGACGGGCGAGTGGGTGTGTTTAACGGGGGGCttcattcataaatacaaaaagatTTTAAAGCCCAAATTCAGGAGAAGACCGGTGGAATCGTTCGCGAGCTTCCCCTCTTTCGTCTCATGGACCACGTGAATTAGAGTTCGGGGGGACACTCTCTCTGGCTTGGACCATGAGCAATGACTCTGCCATATTGACAAACTCAACAGCAGAACCCCCAACCaatggCACGTTGTCGTCAGAGACACAGAATGGCTACGTCCTCCTGCTGGTCCTCTTGTCCATTTTTGTCGGGGGGACACTGGTCCTGCTCTCTGTCCTTCTGATTGTCTGTCGCCGCTGTTGTGAAGGAGACAGACGTCATGCATGGTTCATTGTTTGCCTCAGGGCTAGCGATGACACCGAGAAAAGTAACACCACCTATATTGAAGAAGCCCAGCCGGTGCACGAGATTACGATTCGTGTGGATGAGTCAGATTGCCTGTCGGCTGCCAGCTCCCACGACATGGAGACGGAGCGTTTCCTCTCAACGGGCACAACCGGCCGCCGGGTCTCCTTCAACGAAGCCGCACTCTTCGATCACAGCAAGAAAACACAGGAGAAAGGGCGAAGGTACACACTAACTGAGGGCGACTTCCACCACCTGAAGAATGCGCGTCTCACACACCTCCACCTCCCTCCACCCGCCCTCCAGATCCTCACCATCCATGAGTGTGAGTCTTCAGAGAACAGCCTCGCCATGATGACGCGTCCCGTCGCCAAATCCAGCCTGTCCATCTTTCAGACTGCCCTGACCAGCCGGACTCTCAGTCCCAGCTCTGCCCTTCCTGGAGACACTCTCAATTCCACTGTGGACACAACATTCTGTGAAAGCATCACAAAAGCCGGCGCTGAGCCCTCAAGCCCATGTCTG
>TCONS_00040401
CTCCcgaaatcattctgcataaatctgtagattaatttttacaaaattctctaaAGAAATAACCAAAGAAGTCCTCATATTCTCCCTGATTCTCGTCATcaacttaacaagtggattatTTAACTAATAATTGGCGACAGGTTgttgatttgttaaaaaaatgatgTATAAACAAGGTAGTGATGCTTTTAAACTTTGGGTGTGCATTCTTTTCTAATATATCAATGGCCTGTCATCAATTTTTACTGTCCTTTTACTGCGGCACCCACATTTGTCGGGTTTTTGTCCTTATATCACtgcaaagtttttattttttgatttttggCTTTAGCAGGATGTGAGGTTATTTGAAATAACTGATAATGCTCTGTGTAGTGATATACCACTGTAATGCAGTCAAGAGCTGCCTGGATTTACTTTACACTGTATAAAATGCTGGGGTTTACACAACTGATTTGTGTTAGGactacatgaaggaattaagttagcttatttgttcattcatgatCTGCTGAAAGTAAATCTTAATATCTAACAAGTTTTCTTTAAATATTCGATAGATGAAATGTACACATTTAGCCATTTCTTTGAAAAAAActttacagattttttacagtttaacacACATTACACCCATAATTCATGCAGAGCACAATGGGGCATAGGAAAATAGCAGATAAGAAAAGACATAATGCTTTTCCATGCGTATTTACATTCAAGCTTGAGGTAAAGCATCAAGGTCAAGTTTAGGTGACATTTAGACAGTCAGGCGAGGGCGATAAACAAACGCGTTCTGTGGTCTAATCTGTCTCTCGACACGCAGAGATTACGATTCGTGTGGATGAGTCAGATTGCCTGTCGGCTGCCAGCTCCCACGACATGGAGACGGAGCGTTTCCTCTCAACGGGCACAACCGGCCGCCGGGTCTCCTTCAACGAAGCCGCACTCTTCGATCACAGCAAGAAAACACAGGAGAAAGGGCGAAGGTACACACTAACTGAGGGCGACTTCCACCACCTGAAGAATGCGCGTCTCACACACCTCCACCTCCCTCCACCCGCCCTCCAGATCCTCACCATCCATGAGTGTGAGTCTTCAGAGAACAGCCTCGCCATGATGACGCGTCCCGTCGCCAAATCCAGCCTGTCCATCTTTCAGCCACCAGTATGTTCACTGCCCCAGACTGCCCTGACCAGCCGGACTCTCAGTCCCAGCTCTGCCCTTCCTGGAGACACTCTCAATTCCACTGTGGACACAACATTCTGTGAAAGCATCACAAAAGCCGGCGCTGAGCCCTCAAGCCCATGTCTGTTGGAGGTCAGAGGGGGAGTCGGCAGGGGCGCAGACATCATGGGTAATGGTAGAGAGGCTGCGTCGGCCTCAGCCACGGCTCTGTCCTCATCTGGCGGGGTCTCACAGGGTCCAATGCTGCAGTTCTTCACTAAGCTCCGCCGTCACGCCAGTCTGGAGGGAGCAAGTCCATACTTCAAGATCAAGAAGTGGAAGTTTGACAGCAGCCAGAGAGCTTCAAGTCTCGACATGAGAGGCTCTCCCAAACGGAGGCAGTTCCAGCGGCAGCGCGCAGCCAGCGAGAGTATGGACCAGGAAGAGCATGACGCCCATCACATTGACCTCATCCAGTACATCGCTCGCACTAAGGATATTACATACTGCCCGGCCCGAGCCAGTCCACGTCTTCTATCCCCCCCTTCCACACCCCCACCCCCCCTCGGCAGGTTAGAGGTGGAGGTGATGGTGGAGCCCAGTTGCAGCAGAGCGTTGGGTCCTGGGGTGATCGGCCTTACCTCCGAGCCCCCAGATGAAAGTCTTGGAATGGGTTTTCATCAAGAAAGCTTAGAACCTCAGACCTTATACCGTGATATATGGACTCTTCGCGCCTCTCTTGAGCGTTATGTCTCATCCGACCAGAGCAGCAACAATGACAGAGACTCAGTCCGTAGTGACGCAGAGAGCGTGTGTTCTCTCGGGGGTAAGTACGAAATGGGAGGGCTTCCTAGGTACCCTTCGCAGGATATTGGTGATGAAATGGAGGGAGATGCAGACTTGCCTTTAGAAGAGAGTTCTGAGAAAGGTCGTAAACAGGATAGTGTTGATTCTGAAAGAGGAAGTGATGGGGAGCCAGGAAACCGCAAGCTTCTACAAATGGACAGTGGTTACGCCTCAATTGAAGCACCTTCACGTGCTCCCGAAGAGCTGAGACTGTTtggaagcagcagcagcagcagcaaggaTGGCTCCGCCATGGAGCGCAGGCACTTCTTCAGTTCTGGCCATAAAGGGACCGTGTGTGAGAGCTTCGACACAGACATCTTAGATGAAGAACTTGAAGAGGAGCCCACGGGTGCCAGTGGTGGAGTGGATGGAGTGGAAACAAGCGAGAGCACTATGCTTTGGTCCCCGTATGGCCAAATGTTCACTCAACGCGATGCTCAACCTCATCCCCCAGTTCTTTCCCGCCGTGACTACAGCATTGATGAGAAAACTGAAGCACTTTTCCATGAGTTCTTAAGGCATGACCCACAGTTTGATCAGCAGGAGTCTCCGCTACGCTCCAAGCATCGTTCTCGTGTGCACCTGCGGAAGCAGTGGCAGCGTTCCAAGCAGTACAGTGACCCCGGCCAGCGCTTCCAAACCTCTTTTGACCGGTATCGCACTCCACTCCGACGTGGTGAAACTGTCAACTATCCTCTAGAAACTAGCTACCAGAGCACGCTCCCACGAATCATTAGTGCACCTGATGAAGAGAGCAGTGAAGGTGCAACTAGTACTCCAGAGATTCCCAAGGGAGACCAGGATGCCACTACCGATGTGGATCCAGACAAGACAAGAATATCTTCCAGCAGCGAAAGCAGCGGAATCATCCATAAGAAGGAATTCCTTGAGGCATCAAAGCCCCTGCCAATGACTGACATTGCTGGAGAGCAATCTGTGGGTCGGGAGAACTCTAGGCAAGTGTTGCCACCTCCTGATGAACCTACCCCCGAATGTACAAGCTACGGACCACAGACAATCACAGAAGAGCTCAGCGACAAGCTAGCAGCTACTCTTGAAGAGCGCCTATACTCGGATCTTCGCAGGACCAGGGAAACACCTGAGTGCAGTACAGTGACTATGACTCACACATCGCCAGATCACAGTCCAGTGTAG
>TCONS_00040402
GGTCCAATGCTGCAGTTCTTCACTAAGCTCCGCCGTCACGCCAGTCTGGAGGGAGCAAGTCCATACTTCAAGATCAAGAAGTGGAAGTTTGACAGCAGCCAGAGAGCTTCAAGTCTCGACATGAGAGGCTCTCCCAAACGGAGGCAGTTCCAGCGGCAGCGCGCAGCCAGCGAGAGTATGGACCAGGAAGAGCATGACGCCCATCACATTGACCTCATCCAGTACATCGCTCGCACTAAGGATATTACATACTGCCCGGCCCGAGCCAGTCCACGTCTTCTATCCCCCCCTTCCACACCCCCACCCCCCCTCGGCAGGTTAGAGGTGGAGGTGATGGTGGAGCCCAGTTGCAGCAGAGCGTTGGGTCCTGGGGTGATCGGCCTTACCTCCGAGCCCCCAGATGAAAGTCTTGGAATGGGTTTTCATCAAGAAAGCTTAGAACCTCAGACCTTATACCGTGATATATGGACTCTTCGCGCCTCTCTTGAGCGTTATGTCTCATCCGACCAGAGCAGCAACAATGACAGAGACTCAGTCCGTAGTGACGCAGAGAGCGTGTGTTCTCTCGGGGGTAAGTACGAAATGGGAGGGCTTCCTAGGTACCCTTCGCAGGATATTGGTGATGAAATGGAGGGAGATGCAGACTTGCCTTTAGAAGAGAGTTCTGAGAAAGGTCGTAAACAGGATAGTGTTGATTCTGAAAGAGGAAGTGATGGGGAGCCAGGAAACCGCAAGCTTCTACAAATGGACAGTGGTTACGCCTCAATTGAAGCACCTTCACGTGCTCCCGAAGAGCTGAGACTGTTtggaagcagcagcagcagcagcaaggaTGGCTCCGCCATGGAGCGCAGGCACTTCTTCAGTTCTGGCCATAAAGGGACCGTGTGTGAGAGCTTCGACACAGACATCTTAGATGAAGAACTTGAAGAGGAGCCCACGGGTGCCAGTGGTGGAGTGGATGGAGTGGAAACAAGCGAGAGCACTATGCTTTGGTCCCCGTATGGCCAAATGTTCACTCAACGCGATGCTCAACCTCATCCCCCAGTTCTTTCCCGCCGTGACTACAGCATTGATGAGAAAACTGAAGCACTTTTCCATGAGTTCTTAAGGCATGACCCACAGTTTGATCAGCAGGAGTCTCCGCTACGCTCCAAGCATCGTTCTCGTGTGCACCTGCGGAAGCAGTGGCAGCGTTCCAAGCAGTACAGTGACCCCGGCCAGCGCTTCCAAACCTCTTTTGACCGGTATCGCACTCCACTCCGACGTGGTGAAACTGTCAACTATCCTCTAGAAACTAGCTACCAGAGCACGCTCCCACGAATCATTAGTGCACCTGATGAAGAGAGCAGTGAAGGTGCAACTAGTACTCCAGAGATTCCCAAGGGAGACCAGGATGCCACTACCGATGTGGATCCAGACAAGACAAGAATATCTTCCAGCAGCGAAAGCAGCGGAATCATCCATAAGAAGGAATTCCTTGAGGCATCAAAGCCCCTGCCAATGACTGACATTGCTGGAGAGCAATCTGTGGGTCGGGAGAACTCTAGGCAAGTGTTGCCACCTCCTGATGAACCTACCCCCGAATGTACAAGCTACGGACCACAGACAATCACAGAAGAGCTCAGCGACAAGCTAGCAGCTACTCTTGAAGAGCGCCTATACTCGGATCTTCGCAGGACCAGGGAAACACCTGAGTGCAGTACAGTGACTATGACTCACACATCGCCAGATCACAGTCCAGTGTAG

Function

symbol description
cbarpb Predicted to enable transmembrane transporter binding activity. Predicted to be involved in negative regulation of calcium ion-dependent exocytosis and negative regulation of voltage-gated calcium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Predicted to colocalize with secretory granule. Orthologous to human CBARP (CACN subunit beta associated regulatory protein).

GO:

id name namespace
GO:1901386 negative regulation of voltage-gated calcium channel activity biological_process
GO:0045955 negative regulation of calcium ion-dependent exocytosis biological_process
GO:0030141 secretory granule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-507 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in negative regulation of calcium ion-dependent exocytosis and negative regulation of voltage-gated calcium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Predicted to colocalize with secretory granule. Orthologous to human CBARP (CACN subunit beta associated regulatory protein).

Ensembl:

ensembl_id ENSDARG00000071325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040400 False 1144 mRNA 0.53 7 18786797 18813682
TCONS_00040401 False 3168 mRNA 0.49 6 18807527 18824801
TCONS_00040402 True 1749 mRNA 0.53 3 18816662 18824801

Neighbor

gene id symbol gene type direction distance location
XLOC_020351 NA coding upstream 190539 18560343 ~ 18596258 (+)
XLOC_020350 si:ch211-212d10.1 coding upstream 249382 18530395 ~ 18537415 (+)
XLOC_020349 BX649279.1 coding upstream 288152 18497759 ~ 18498645 (+)
XLOC_020348 cilp2 coding upstream 301327 18469004 ~ 18485470 (+)
XLOC_020347 yjefn3 coding upstream 322143 18389271 ~ 18464654 (+)
XLOC_020353 fstl3 coding downstream 60170 18884971 ~ 18897231 (+)
XLOC_020354 bsg coding downstream 104611 18929412 ~ 18946453 (+)
XLOC_020355 hcn2b coding downstream 126295 18951096 ~ 19007968 (+)
XLOC_020356 fgf22 coding downstream 286643 19111444 ~ 19156332 (+)
XLOC_020357 si:dkey-21e2.3 coding downstream 350850 19175651 ~ 19183506 (+)
XLOC_020344 NA non-coding upstream 482509 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 495000 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 962224 17824459 ~ 17824573 (+)
XLOC_020324 NA non-coding upstream 1975436 16810284 ~ 16811361 (+)
XLOC_020360 BX927243.1 non-coding downstream 412230 19237031 ~ 19238226 (+)
XLOC_020380 BX510913.2 non-coding downstream 946897 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 968318 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 1014474 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 1186995 20011796 ~ 20050276 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005968 NA coding CM030142.1 CM030142.1 13733681 ~ 13743505 (+)