G92629 (LOC106577200)


Basic Information

Item Value
gene id G92629
gene name LOC106577200
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82172016 ~ 82179214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU102049
TTACTGACCCACTGCAAGTGTCTTTTAATGGAAACTACAAAGCAAACATGTACACCAAAGAATGACGGAAATAGCTACCGTcataaaactgtaaaaaataaaagaccGTAGTGCTTCTTTCTCTTGTTGTTGTAGCCTCTGAACACGCCCCTTTCCATGGTACATCCTCTTGCTGGTTTGAGTTGGAAATACATCATAAGGCCAGATTCTGCTGATATTCCCTTATCCCCTTCGCCGTGACGATAGTTTAGGCCTCCAGTTCCAACCCCAGGCCCAGCTTGTGGCCTCCAGTGTTGATGCTCTTGCCGTCCACCAGGGCAGAGAGCGTGAGTTTCACACCTGGTCTCAGCGTCTGGGTGTATCCAAGACCGACCAGGCTGATGTTGTTCACTTTAGCACTGATGGAGGCACTCTTGTCCAGCTGGTATTTGGCTGCGATGCCGAAGCTTGTGCTGTTGCTGCCGGCAGTCCAGGCAAGGTTGACCGCTGTCTCCAGCGCTGGACTCACTTTCTGGTAGATTGAGCCACCAAACTGTACACCGTCATTAACGTTGGTGTGTAGCTGGAAGTCTCCGGTCTTGTATCCCACAGCGAAGTTGTTCTGGGTCATCTTAGACTTGGCCGTGTCAAAAGTCATCTGGTAGCCGGCAAGCCAGCCCTCGTAACCAACGACGGCCGCTCCATGGATAGCGGGGCCAGCGAAGTCAAAGTCAACGTCACAGCCCAGGTTGACAAACTCGCGCTTGTAGGCGGTCTTGACTTTGCCGCTCTTCTTGCCAGTGTTTGGTGAGAAGGTTGTGTCAAATGTCAGCTTCAGACCCTTGACAATCTGGTCTTCGACGGTGATCTCTGTTCCCAGGGTGTTGTCAGTGTTCCACTTCTCTGTGAAGGTCAGGCCGTACTCTGACCTCTTGTATTTGGTTTCCAGGCTGCCCGCCACCTTGCTGGTGTCTGTGTTGGTGGAGCCAGCTGTTTTGAACTCCACTCCGCTGCCGGACTTGGTCTTCACATCAAGCTTCACCAGGCCGAACCCATAGCCTTTGCTGAAGATGTCCTTGGCGGACTTGCCGAGGTCACCATATGATGGAGGCACAGCCATTACACCAGTAAAAGATAAGGCTAGCAGTAAACTTCACCGGTTGGAGGGCGACTTGAAGGAGACTGCAATGTAATGAAATCCAGCCTATCAACCGAAAGACCCCTCTACCTGTCACATGTTTGCCTGTCTAAAAAAATACTTGCAGATTCATTACAAAATAATTACAAAATCAAAAGTTTAAAAGGCTTTTGGCTGTGACTAGATTTTTT
>TU102048
aaaaaatgtggaaaaagtcaaggggtatgaatactttccaaatgtactgtaAGTGAAGTTTCTGGTCACATTGGGATGAGAATGGTGTGGCGCATTTCATTGTCATGGCAGTGTTAGATAGATACAATGAGAAGGTGTATAAATTACTGACCCACTGCAAGTGTCTTTTAATGGAAACTACAAAGCAAACATGTACACCAAAGAATGACGGAAATAGCTACCGTcataaaactgtaaaaaataaaagaccGTAGTGCTTCTTTCTCTTGTTGTTGTAGCCTCTGAACACGCCCCTTTCCATGGTACATCCTCTTGCTGGTTTGAGTTGGAAATACATCATAAGGCCAGATTCTGCTGATATTCCCTTATCCCCTTCGCCGTGACGATAGTTTAGGCCTCCAGTTCCAACCCCAGGCCCAGCTTGTGGCCTCCAGTGTTGATGCTCTTGCCGTCCACCAGGGCAGAGAGCGTGAGTTTCACACCTGCTGGTCTCAGCGTCTGGGTGTATCCAAGACCGACCAGGCTGATGTTGTTCACTTTAGCC

Function

NR:

description
voltage-dependent anion-selective channel protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102049 False 1308 lncRNA 0.50 9 82172016 82179071
TU102048 True 544 lncRNA 0.45 2 82177868 82179214

Neighbor

gene id symbol gene type direction distance location
LOC110530583 LOC106577201 coding downstream 15458 82150127 ~ 82156558 (-)
LOC110530522 LOC106577205 coding downstream 266357 81863824 ~ 81905659 (-)
LOC110530466 LOC106577213 coding downstream 446250 81648412 ~ 81725766 (-)
LOC110530475 eif4ebp2 coding downstream 542290 81607478 ~ 81629726 (-)
qrfpra LOC106577227 coding downstream 614638 81545225 ~ 81557378 (-)
LOC110532767 LOC106577224 coding upstream 3679 82182893 ~ 82187206 (-)
LOC110530609 LOC106577197 coding upstream 11704 82190918 ~ 82198422 (-)
LOC118966721 LOC106577224 coding upstream 31288 82210502 ~ 82218883 (-)
LOC118966722 LOC106600083 coding upstream 53366 82232580 ~ 82245632 (-)
LOC110532773 LOC106600083 coding upstream 78832 82258046 ~ 82266018 (-)
G92622 NA non-coding downstream 7903 82163894 ~ 82164113 (-)
G92566 NA non-coding downstream 10273 82160407 ~ 82161743 (-)
G92547 NA non-coding downstream 57771 82113993 ~ 82114245 (-)
G92533 NA non-coding downstream 79356 82092430 ~ 82092660 (-)
G92474 NA non-coding downstream 86559 82085159 ~ 82085457 (-)
G92636 NA non-coding upstream 81 82179295 ~ 82180152 (-)
G92637 NA non-coding upstream 9086 82188300 ~ 82189565 (-)
G92631 NA non-coding upstream 21202 82200416 ~ 82223759 (-)
G92630 NA non-coding upstream 23641 82202855 ~ 82203272 (-)
G92633 NA non-coding upstream 67636 82246850 ~ 82291520 (-)
LOC110532756 LOC106577174 other downstream 990553 81175845 ~ 81449471 (-)
G91947 NA other downstream 1135878 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 1140658 81030832 ~ 81031358 (-)
LOC110532782 LOC106577197 other upstream 114599 82291777 ~ 82301867 (-)
LOC100301648 LOC106577193 other upstream 770400 82949609 ~ 83267163 (-)
G94201 NA other upstream 1304842 83484056 ~ 83485937 (-)
G94613 NA other upstream 1622118 83801332 ~ 83802471 (-)
LOC110531033 LOC106577242 other upstream 1979609 84157529 ~ 84256949 (-)

Expression


Co-expression Network