G92575 (trmt13)


Basic Information

Item Value
gene id G92575
gene name trmt13
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82180946 ~ 82181796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU101989
tgtttcatccctgttagtgagcatttatcctctGCCAAGATAATGCAGTTGTGGCAtctcaagaagctgattaaacagcatgatcattacacaggtgcaccttgtgctgggggcactAAAAggctaaatgtgcagttttgtcaaacaacacaatgtaatagAAGTCTCAAGTGGGAGAgtggaattggcatgctgactgcaggaatgtccaccagagctgttgccagagaatttaatattaatttctctaccataagccgaaaCCTACagagttttagagaatttggcagtacgtccaactggcctcacaataACAGACCAAGTGTATTGCGTCCTGTGGGCGAGCATTTTGCTGACTTCAACGTTGTAAACAGTTGGCAAAAGCAGGCAAAAGCTACGGACGGTgaacacaaatgcattttatcgatggcaatttgaatgtacagagataacgtgacgagatcctgaggcccattgtcatgccattcatctgttCATCATTCAtacgccgccatcacctcatgtttcagcatgataatgcacttcccaatgtcgcaaggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatggtctgcattgtcaccaggcatgtcacccattgagcatgtttgggatgctctggattgacgtgtacggcagcgtgttccagttcccgctagtatccagcaacttcacacagccattgaagaggagtgggacaacattccacaggccacaatcaacagccggatcaactctatgcaaaggagatgtgtcacactgcatgaggcaaatggtggtcacaccagatactgactggttttctgatccacg

Function

symbol description
trmt13 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog).

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101989 True 851 TUCP 0.60 1 82180946 82181796

Neighbor

gene id symbol gene type direction distance location
LOC110530588 LOC106577200 coding upstream 1869 82172076 ~ 82179077 (+)
LOC110530572 LOC106577202 coding upstream 32097 82128619 ~ 82163498 (+)
LOC110530536 LOC106577203 coding upstream 177293 81910118 ~ 82005198 (+)
LOC110530526 LOC106577204 coding upstream 273547 81906132 ~ 81907399 (+)
fih1 LOC106577208 coding upstream 319051 81852648 ~ 81861895 (+)
LOC110530624 cssa18h10orf11 coding downstream 274503 82456299 ~ 82916411 (+)
LOC110530670 NA coding downstream 1225855 83407651 ~ 83442131 (+)
LOC110530741 LOC106577189 coding downstream 1270452 83452248 ~ 83484011 (+)
LOC110530763 LOC106577187 coding downstream 1329321 83511117 ~ 83667671 (+)
LOC110530841 LOC106613168 coding downstream 1540063 83721859 ~ 83798056 (+)
G92524 NA non-coding upstream 17055 82163573 ~ 82163891 (+)
G92523 NA non-coding upstream 19274 82160032 ~ 82161672 (+)
G92498 NA non-coding upstream 57940 82122726 ~ 82123006 (+)
G92494 NA non-coding upstream 63667 82116836 ~ 82117279 (+)
G92582 LOC106608577 non-coding downstream 4560 82186356 ~ 82186571 (+)
G92584 NA non-coding downstream 6444 82188240 ~ 82189878 (+)
G92609 NA non-coding downstream 123565 82305361 ~ 82305574 (+)
G92621 NA non-coding downstream 140879 82322675 ~ 82322884 (+)
G92671 NA non-coding downstream 141695 82323491 ~ 82323707 (+)
G92511 NA other upstream 38359 82142124 ~ 82142587 (+)
G91779 NA other upstream 301768 81877539 ~ 81879178 (+)
G91541 LOC106591086 other upstream 639546 81538331 ~ 81541400 (+)
G93204 NA other downstream 906735 83088531 ~ 83089932 (+)
G93362 NA other downstream 1151470 83333266 ~ 83333576 (+)
G94463 NA other downstream 1863515 84045311 ~ 84048149 (+)

Expression


Co-expression Network