XLOC_020358 (si:dkey-21e2.8)


Basic Information

Item Value
gene id XLOC_020358
gene name si:dkey-21e2.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19188809 ~ 19268280 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040414
TGCTGACTCCACCCACTTCTTGTGTTATTTAATAGTGGGCATCACTGCGAGCTCACTGATAGTCTTCATCATGACCATCATGATCATCTCTCTGCTCCTGCTGGTTTCTCTGGTGCCAGACGTGACCTTCACTGCTCGTGTGGGTATAGTGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAATATGATGGGGAGCATATTTGTGGTGGATCCCTCATTACTGAAGAATTTGTTTTGACTGCTGCACATTGCTGGGAAGAAGGTGACGTCCTGACGGTTGTGGTTGGTGCCCATGATTtgagtaaaaatgaaatttacaacTCCTATGAAGTGGCATCCTACATCCCACATCAAGACTATGAACTGAATCCTGATCTGAATGACATCATGCTTTTGAAGCTGAAGAAAAAAGTCAGACTGAGCAACAGCATTGGACTGATATCATTACCAAAAGATGGAGAAGATGTTGAAGCAGATACTATCTGTAGTGTTGCTGGTTGGGGAGATTTGTGGAGTAAAGGCCCAGTGCCTGATCGTCTAATGGAGGCAGAGACAGTTATAGTGAATGATGCAGAGTGTGAACGCAGATGGGGATCTGAATATGTGGCCTCAGAGATGATCTGTGCTTATGGCCATGGAGGATCCTGCAATGGGGATTCAGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGCATCACAGCTTTTGGTGACCGTTATCTCTGTAATTCACGCTTGCGTCCTAATGTGTATACTAGGATTTCAGCATATATTCCATGGATCCACAACATAACTGGAAAGGTTTAGTGACTTTatgatatataaaatgttttttgtcttgtaatcataaatcatttaataaacgTAGTAAATATTGAGC
>TCONS_00040415
CACTGATAGTCTTCATCATGACCATCATGATCATCTCTCTGCTCCTGCTGGTTTCTCTGGTGCCAGACGTGACCTTCACTGCTCGTGTGGGTATAGTGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAATATGATGGGGAGCATATTTGTGGTGGATCCCTCATTACTGAAGAATTTGTTTTGACTGCTGCACATTGCTGGGAAGAAGGTGACGTCCTGACGGTTGTGGTTGGTGCCCATGATTtgagtaaaaatgaaatttacaacTCCTATGAAGTGGCATCCTACATCCCACATCAAGACTATGAACTGAATCCTGATCTGAATGACATCATGCTTTTGAAGCTGAAGAAAAAAGTCAGACTGAGCAACAGCATTGGACTGATATCATTACCAAAAGATGGAGAAGATGTTGAAGCAGATACTATCTGTAGTGTTGCTGGTTGGGGAGATTTGTGGAGTAAAGGCCCAGTGCCTGATCGTCTAATGGAGGCAGAGACAGTTATAGTGAATGATGCAGAGTGTGAACGCAGATGGGGATCTGAATATGTGGCCTCAGAGATGATCTGTGCTTATGGCCATGGAGGATCCTGCAATGGGGATTCAGGAGGTCCTTTGGTTTGTAATAACACTGCTGTCGGTATCACAGCTTTCGGTGACGGTTATCTCTGTAATTCCCGTCTCTATCCTAATGCTTATACCAAGATTTCAGCATATCTTCAGTGGATCCGATTCAAACTTGAAAATGTTTAGTgacttcatgaaaaaaaaaaaaaagaaatgtttttctttattttttttttccatgtcttTCAATAAAACAATCAGTTTACAAGCATC
>TCONS_00040422
atgggtgtcaGAGCAATCGGAGGCCAGTCATTCAAGCATGTGCTTTTAGTTGATTTTGTtatgggcacaatagtaGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAATATTATGGGCAGCATATCTGCGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAGTAA
>TCONS_00040426
CACTGATAGTCTTCATcatgaccatcatcatcatctctcttCTCCTGCTGGTTTCTTTTGTGCCACACCTGACCTTTACCGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAATATTATGGGCAGCATATCTGCGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAATGTGACATCTTGACGGTTGTGGTTGGCACCCATGATTTGCGTGAAAAAAACGATTGCAACTCCTTTAAAGTGACATCCTACATACCGCATCCAGACTATAATTCTAACACTTTTGAGAATGACATCATGCTTTTGAAGttaaataaaaatgtccGACTGAGCAACAATATTGGACTGATTTCATTATCAAAGAATGGAAAAAGTGCCAAAGCAGAGACTCTCTGTAGTGTTGCTGGTTGGGGAACACTGTGGTTGAATGGCCCACCGATTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGTGCGATGCAGAGTGTGAATACAGATGGGGACCATACTATAAGGCCTCAAAGATGATCTGTGTTTATGGCCATGGTGGAACCTGCATTGGGGATTCAGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGCATCACAGCTTTTGGTGACCGTTATCTCTGTAATTCACGCTTGCGTCCTAATGTGTATACTAGGATTT
>TCONS_00040427
CACTGATAGTCTTCATcatgaccatcatcatcatctctcttCTCCTGCTGGTTTCTTTTGTGCCACACCTGACCTTTACCGCTCATGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAATATTATGGGCAGCATATCTGCGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAATGTGACATCTTGACGGTTGTGGTTGGCACCCATGATTTGCGTGAAAAAAACGATTGCAACTCCTTTAAAGTGACATCCTACATACCGCATCCAGACTATAATTCTAACACTTTTGAGAATGACATCATGCTTTTGAAGttaaataaaaatgtccGACTGAGCAACAATATTGGACTGATTTCATTATCAAAGAATGGAAAAAGTGCCAAAGCAGAGACTCTCTGTAGTGTTGCTGGTTGGGGAACACTGTGGTTGAATGGCCCACCGATTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGTGCGATGCAGAGTGTGAATACAGATGGGGACCATACTATAAGGCCTCAAAGATGATCTGTGTTTATGGCCATGGTGGAACCTGCATTGGGGATTCAGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGCATCACAGCTTTTGGTGACCGTTATCTCTGTAATTCACGCTTGCGTCCTAATGTGTATACTAGGATTTCAGCATATATTCCATGGATCCACAACATAACTGGAAAGGTTTAGTGACTTTatgatatataaaatgttttttgtcttgtaatcataaatcatttaataaacgTAGTAAATATTGAGCAT

Function

symbol description
si:dkey-21e2.8 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-459 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.
ZDB-GENE-050208-697 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000092532 ENSDARG00000095729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040414 False 899 mRNA 0.43 5 19188809 19268278
TCONS_00040415 False 860 mRNA 0.42 5 19188862 19190147
TCONS_00040422 False 207 mRNA 0.44 2 19262161 19267305
TCONS_00040426 False 714 mRNA 0.43 5 19266995 19268161
TCONS_00040427 True 848 mRNA 0.41 5 19266995 19268280

Neighbor

gene id symbol gene type direction distance location
XLOC_020357 si:dkey-21e2.3 coding upstream 5303 19175651 ~ 19183506 (+)
XLOC_020356 fgf22 coding upstream 32477 19111444 ~ 19156332 (+)
XLOC_020355 hcn2b coding upstream 180841 18951096 ~ 19007968 (+)
XLOC_020354 bsg coding upstream 242356 18929412 ~ 18946453 (+)
XLOC_020353 fstl3 coding upstream 291578 18884971 ~ 18897231 (+)
XLOC_020363 si:dkey-21e2.13 coding downstream 9081 19277361 ~ 19279253 (+)
XLOC_020364 si:dkey-21e2.14 coding downstream 15698 19283978 ~ 19285300 (+)
XLOC_020365 si:dkey-21e2.15 coding downstream 21690 19289970 ~ 19291261 (+)
XLOC_020366 si:dkey-21e2.16 coding downstream 43131 19311411 ~ 19313738 (+)
XLOC_020367 si:dkey-21e2.12 coding downstream 96940 19365220 ~ 19367446 (+)
XLOC_020351 NA non-coding upstream 592551 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 884521 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 897012 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1364236 17824459 ~ 17824573 (+)
XLOC_020324 NA non-coding upstream 2377448 16810284 ~ 16811361 (+)
XLOC_020380 BX510913.2 non-coding downstream 503418 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 524839 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 570995 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 743516 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 871245 20139525 ~ 20139592 (+)

Expression


Co-expression Network