XLOC_020359 (si:dkey-21e2.7)


Basic Information

Item Value
gene id XLOC_020359
gene name si:dkey-21e2.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19218733 ~ 19233919 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040416
cagTTTGAATGTCTGTACCCACCTTTAGTGTCTATTTTTAAAGAGGTGTATTTACTGTATAGTGTTTTTTCATTGAGAGCTCACTGACAGTCTTCATcatgaccatcatcatcatctctgtgCTCCTGCTGGTTTCTCTGGTGCAACACCTGACCTTCACTGGTAAGACATGACTTAAAGGTTTGTTAAGAATATTGAAAATACATGTTCTCATGCAGTAATTGACTAACAACACTATTGCTTTCAGCCCATGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCGCTTCAATATTATAGCCAACATATCTGTGGTGGATTCCTCATTACTGAACAATTTGTCTTGACTGCTGCACATTGCTGGGCAAAGTAAGAGTTTTGTTTAGCGTGAACTGAGATGTTGAGCTAAAATCCCCTTTGATTGACACATCAGCTGCAGTAGAGTCATACAGTGCATCATATGACAGTGATATAcaatgtgcttttttttaaacagaggtTTGGTCCTCTCGGTTGTCGCTGGCGCCCATTATTTGAGTGAAAATGAAATTTACGACTCATTTGAAGTGGAATCCTACATCCCGCATCCAGACTATAATTCTAATACATTTGAGAATGACATCCTGCTTTTGAAGttaaataaaaaagtcagaCTGAGCAACATTGTTGGACTGATATCATTACCAAAGGATGGAGAAGATGTTGAAGCAGATACTCTCTGTAGTGTTGCTGGCTGGGGGGATCTGTGGAGTAAAGGCCCAGAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAGTGAATAATGCAGAGTGTGAACGCAGATGGGGATCTGATTATGTGGCCTCAAAGATGATCTGTGTTTATGGTCATGGTGGATCCTGCAAAGTATGTATGATACTGTAGAATAGATGATTCAGAATTTATGTTAATGTTTGAACTAATTTCACTAGTGACGTGTTGATCTGTGTTTTTAACAGGGGAATTCAGGAGGTCCTTTGGTTTGTGGAGACACCGTTGTTGGGATCACTTCTTTCGGTGACCATTATCTCTGTAATTCACGTTTGTTTCCTAATGTGTATACTAGGATTTCAGCATATCTTCCATGGATCCAGAAATATTTAGTTATT
>TCONS_00040417
AGAGCTCACTGACAGTCTTCATcatgaccatcatcatcatctctgtgCTCCTGCTGGTTTCTCTGGTGCAACACCTGACCTTCACTGCCCATGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCGCTTCAATATTATAGCCAACATATCTGTGGTGGATTCCTCATTACTGAACAATTTGTCTTGACTGCTGCACATTGCTGGGCAAAaggtTTGGTCCTCTCGGTTGTCGCTGGCGCCCATTATTTGAGTGAAAATGAAATTTACGACTCATTTGAAGTGGAATCCTACATCCCGCATCCAGACTATAATTCTAATACATTTGAGAATGACATCCTGCTTTTGAAGCTAAAGACAAAGGTCAGACTGAGCAACATTGTTGGAATGATATCATTACCAAAGGATGGAGAAGATGTTAAAGCAGATACTCTCTGTAGTGTTGCTGGTTGGGGAACACTGTGGAAAAATGGCCCAAAACCTGATCGTCTAATGGAGGCAGAGACAGTTATAGTGAATGATGCAGAGTGTGAACGCAGATGGGAATCTTTTTATAAGGCCTCAAAGATGATCTGTGTTTATGGTCATGGTGGATCCTGCTATGGGGATTCTGGAGGTCCTTTGGTTTGTGATAACACTGCTTTTGGTATCACTTCTTTTGTTGACCTTTATCTCTGTAATTCACGTTTGCGTCCTAATGTGTATACTAGGACTTCAGCACATCTCCCCTGGATCCACAACATAACTGGAAATTTTTAGTGGCttcatgtaaaaagattttttattgaatttttatataaaattttcaaTAAAAGTATGAAATGGCAAGCATC
>TCONS_00040418
AGTTCATAATTAACAATTGTGTTTTGCATTACAGCTAAAGACAAAGGTCAGACTGAGCAACATTGTTGGAATGATATCATTACCAAAGGATGGAGAAGATGTTAAAGCAGATACTCTCTGTAGTGTTGCTGGTTGGGGAACACTGTGGAAAAATGGCCCAAAACCTGATCGTCTAATGGAGGCAGAGACAGTTATAGTGAATGATGCAGAGTGTGAACGCAGATGGGAATCTTTTTATAAGGCCTCAAAGATGATCTGTGTTTATGGTCATGGTGGATCCTGCTATGGGGATTCTGGAGGTCCTTTGGTTTGTGATAACACTGCTTTTGGTATCACTTCTTTTGTTGACCTTTATCTCTGTAATTCACGTTTGCGTCCTAATGTGTATACTAGGACTTCAGCACATCTCCCCTGGATCCACAACATAACTGGAAATTTTTAGTGGCttcatgtaaaaagattttttattgaatttttatataaaattttcaaTAAAAGTATGAAATGGCAAGCATCAATCA
>TCONS_00040419
AGAGCTCACTGATAGTCTTCATCATGACCATGATCATCATCTCTGTGCTCCAGCTGGTTTCTCTGGTGCCACACCTGACCTTCACTGAGGACGGCACTGAAGCAAAACCTTACTCCAGACCTTACATGGTTTCTCTTCAGATAAACAGCAAGCATATCTGTGGTGGATCCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGGCAAATGAAAATGAAATTTACGACTCATTTGAAGTAGAATCCTACATCCCGCATCCAGACTATAATTCTAATACATTTGAGAATGACATCTTGCTTTTGAAGttaaataaaaaagtcagaCTGAGCAACATTGTTGGACTGATATCATTACCAAAGGATGGAGAAGATGTTGAAGCAGATACTCTCTGTAGTGTTGCTGGCTGGGGGGATCTGTGGAGTAAAGGCCCAGAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAGTGAATAATGCAGAGTGTGAACGCAGATGGGGATCTGATTATGTGGCCTCAAAGATGATCTGTGTTTATGGTCATGGTGGATCCTGCAAAGGGAATTCAGGAGGTCCTTTGGTTTGTGGAGACACCGTTGTTGGGATCACTTCTTTCGGTGACCATTATCTCTGTAATTCACGTTTGTTTCCTAATGTGTATACTAGGATTTCAGCATATCTTCCATGGATCCAGAAATATTTAGTTATTTCATAACAAAGGAagaaattttttttcttgaattgCTCTATAAATCtttcaataaaaatatcaaatggaATCATCAATTA

Function

symbol description
si:dkey-21e2.7 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-378 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.
ZDB-GENE-050208-459 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000094662 ENSDARG00000098651

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040416 False 1152 mRNA 0.40 2 19218733 19233839
TCONS_00040417 False 853 mRNA 0.41 5 19218808 19221057
TCONS_00040418 False 521 mRNA 0.38 2 19220459 19221062
TCONS_00040419 True 796 mRNA 0.40 5 19230434 19233919

Neighbor

gene id symbol gene type direction distance location
XLOC_020357 si:dkey-21e2.3 coding upstream 35227 19175651 ~ 19183506 (+)
XLOC_020356 fgf22 coding upstream 62401 19111444 ~ 19156332 (+)
XLOC_020355 hcn2b coding upstream 210765 18951096 ~ 19007968 (+)
XLOC_020354 bsg coding upstream 272280 18929412 ~ 18946453 (+)
XLOC_020353 fstl3 coding upstream 321502 18884971 ~ 18897231 (+)
XLOC_020360 BX927243.1 coding downstream 3112 19237031 ~ 19238226 (+)
XLOC_020361 si:dkey-21e2.10 coding downstream 13336 19247255 ~ 19250734 (+)
XLOC_020362 si:dkey-78l4.5 coding downstream 30262 19264181 ~ 19428807 (+)
XLOC_020363 si:dkey-21e2.13 coding downstream 43442 19277361 ~ 19279253 (+)
XLOC_020364 si:dkey-21e2.14 coding downstream 50059 19283978 ~ 19285300 (+)
XLOC_020351 NA non-coding upstream 622475 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 914445 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 926936 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1394160 17824459 ~ 17824573 (+)
XLOC_020324 NA non-coding upstream 2407372 16810284 ~ 16811361 (+)
XLOC_020380 BX510913.2 non-coding downstream 537779 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 559200 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 605356 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 777877 20011796 ~ 20050276 (+)

Expression


Co-expression Network