XLOC_002036 (slc20a1b)


Basic Information

Item Value
gene id XLOC_002036
gene name slc20a1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17713022 ~ 17728165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003945
GTAATGGAGTTTAAGGTtaagtaaatagttttttttgtcgCGGACATGACCAAATAAGGCACAAGGGCGTGGTGTATTGCTTGACGTCAACAGTGCAACCTAAGCGGTCCCGCCCTCCTATTCGGATGATATATGTCTTGCGTGGACAAGCAGGAACTCATCGTCTGAAGCCGGCTGAAAGCGGTTTATTgcgatttttttcatttattcgaGAACTTGAAACAATTATAGGTGTCTTGTTTGTGGTCTTGATCTCtggatttgtttaatttattcgaCGTTAGTGTTTAAGTAAAAGCGAGAGAATTTAGTGTCTTAACCCGCGCGCGCGGAAAGCCTCTCCGGGAAGTTGACTGGGCGGGCTACTCTGTCAAAATATCTAAATCGACATTTATCGACAAATTTCTTTGAGTGgaatgAGCTACCATTCACCCATCGTGTCTGTTGCACAATGGATGTCCGCTGTATCTGCTTAATTGTCCAAGCCAAAACAAACCGTAACAGATCTAGCCTATTTAGGGGATAGCAATAGGCCCTCACTCCACCCTCTCCCTTTACGATACACATCAGTTTAGAGCAGGGCAGTGCAGATTCTCTCTCTAGTGTCTGGATTGCTTTGATTTTGCTGGTTTAGCAAAGGGCGAAGGTAGGTCTGAGGCAGAAAACGGATTTAGAAACAATAGTACCTCAATTAGCTGGGgataaaatatccagtgtgcTGCTGcttgaattatttatacatttttggttCTCTTCCCTGTAAGATTGtgaagtaattattttttttgcttgaaacttgaaaaaccatctgcgCACAATGGTGTCAACAACTCTTGCCACGATAACAATTATGAGCACCCTCGTCGGGTATACTACAGGGCATCTGACAGCCTATATGTGGCTCCTGATCGTAGGCTTCATCATAGCATTTGTCTTGGCCTTTTCAGTGGGCGCTAATGACGTTGCCAACTCATTCGGTACGGCAGTAGGCTCAGGTGTAGTTACCCTTAGGCAGGCCTGTATTCTTGCTTCTATCTTTGAGACTCTGGGCTCTGTGCTGCTTGGAGCCAAGGTCAGCGAGACCATCCGCAAAGGCATTATCGACGTGACCATGTACAACGATTATGAACATGTGTTGATGGCTGGCTCGGTCAGCGCTATGTTTGGCTCTGCTGTATGGCAGTTGGCTGCTTCTTTTCTGAAACTACCTATTTCTGGGACCCACTGCATCGTTGGAGCTACTATAGGCTTCTCGCTGGTTGCTAAAGGTCAGCAGGGAGTCAAATGGCTGGAGCTTCTCAGAATTATTGCTTCATGGTTCCTCTCGCCTTTGCTGTCCGGCGTCATGTCTGCCGTCCTTTTCTACTTTGTTCGCATGTTCATCTTGCAAAAGAAGGATCCAGTGCCCAATGGTCTGAGGGCCCTGCCATTTTTCTACGCTGTTACAATGGGCATCAACCTGTTTTCCATCATGTTTACCGGAGCACCGATGCTGGGCTTTGATAAGCTGCCCTGGTGGGGAGTGCTACTCATTTCCATCGGCTTTGGCATCATCACCGCCCTCATCGTTTGGTTTGCTGTTTGCCCACGACTCAAGAAGAAGATCGAATGTGAAGTTAAGTCTTCCAGTCCCTCTGAGAGTCCTTTAATGGAGAAGAGGGAGCTGCACGAAGCTCACAGTCCCATCCTGAAACCTGTCCCTGAGGAATCCAGTGTCCTGTCCTCCAGCACCCCCACaactcctcctcttcctcctcctgaGGAGCGCAGGGTCACCTTTGACATTGGCGATTCAGATGACGCCGATCAAAAGGACTGCAAGGAGTCAGACCTGGGCGGTGCTCCAAAGACAGCTCATGTTCATTTCACCAACGGCCCCGCTCACATTCCCAGCAACGGATACTCTCAATACCACACAGTTCACAAGGACTCCGGCCTCTACAAGGACCTGCTGCACAAACTCCATCTGGCAAAAGTGGGAGACTGCATGGGGGAAGGTGGCGACCGGCCCATTCGTCGCAACAACAGCTACACCTCCTACACCATGGCTATAATCGGCATGCACGGAGACTTCAAGCCCAAAGAGTCTGAATTCCGCGCTTCAGAAGATGGAGACAAGGAAAAGGCCGGCGCCCAGGAGAGGAAGCGCATCCGAATGGACAGCTACACCAGTTACTGTAACGCAGTGGCAGAGAATGGTACCCCTGAAGACCTCGGCGAGGGGGAGGTCACTTTAGAGATGGTTGATGAAGATGCCGGGAGCAGCCGTAGTTCATTAGAGGAGGACAGAACCGATGCTGATAAACCTGAGGTGTCCATGCTCTTTCAGTTCCTGCAAATTCTCACCGCCTGTTTCGGCTCGTTTGCTCACGGAGGAAATGATGTCAGTAATGCAATTGGTCCCCTGGTTGCTCTCTGGCTGGTCTATGAGAGTGGGTCTGTTATATCGAGTGCACCGACTCCAATCTGGCTGCTGCTGTATGGAGGAGTGGGCATCTGTGTGGGCCTGTGGGTCTGGGGCCGTAGAGTCATCCAGACCATGGGCAGGGACCTGACCCCCATCACCCCATCAAGCGGTTTCAGCATCGAGCTCGCCTCCGCTGTCACTGTTGTGGTGGCTTCCAACATCGGTCTTCCAGTTTCCACTACTCACTGCAAGGTCGGGTCTGTGGTGGCTGTGGGGTGGCTGCGCTCCAGGAAAGCTGTGGACTGGCGGCTGTTCAGAAACATCTTCATGGCCTGGTTTGTCACGGTGCCCATTTCTGGCCTTATCAGCGCCGCCATCATGGCCCTTTTCACCTACGTCATTCTTTGA
>TCONS_00003946
aaacttgaaaaaccatctgcgCACAATGGTGTCAACAACTCTTGCCACGATAACAATTATGAGCACCCTCGTCGGGTATACTACAGGGCATCTGACAGCCTATATGTGGCTCCTGATCGTAGGCTTCATCATAGCATTTGTCTTGGCCTTTTCAGTGGGCGCTAATGACGTTGCCAACTCATTCGGTACGGCAGTAGGCTCAGGTGTAGTTACCCTTAGGCAGGCCTGTATTCTTGCTTCTATCTTTGAGACTCTGGGCTCTGTGCTGCTTGGAGCCAAGGTCAGCGAGACCATCCGCAAAGGCATTATCGACGTGACCATGTACAACGATTATGAACATGTGTTGATGGCTGGCTCGGTCAGCGCTATGTTTGGCTCTGCTGTATGGCAGTTGGCTGCTTCTTTTCTGAAACTACCTATTTCTGGGACCCACTGCATCGTTGGAGCTACTATAGGCTTCTCGCTGGTTGCTAAAGGTCAGCAGGGAGTCAAATGGCTGGAGCTTCTCAGAATTATTGCTTCATGGTTCCTCTCGCCTTTGCTGTCCGGCGTCATGTCTGCCGTCCTTTTCTACTTTGTTCGCATGTTCATCTTGCAAAAGAAGGATCCAGTGCCCAATGGTCTGAGGGCCCTGCCATTTTTCTACGCTGTTACAATGGGCATCAACCTGTTTTCCATCATGTTTACCGGAGCACCGATGCTGGGCTTTGATAAGCTGCCCTGGTGGGGAGTGCTACTCATTTCCATCGGCTTTGGCATCATCACCGCCCTCATCGTTTGGTTTGCTGTTTGCCCACGACTCAAGAAGAAGATCGAATGTGAAGTTAAGTCTTCCAGTCCCTCTGAGAGTCCTTTAATGGAGAAGAGGGAGCTGCACGAAGCTCACAGTCCCATCCTGAAACCTGTCCCTGAGGAATCCAGTGTCCTGTCCTCCAGCACCCCCACaactcctcctcttcctcctcctgaGGAGCGCAGGGTCACCTTTGACATTGGCGATTCAGATGACGCCGATCAAAAGGACTGCAAGGAGTCAGACCTGGGCGGTGCTCCAAAGACAGCTCATGTTCATTTCACCAACGGCCCCGCTCACATTCCCAGCAACGGATACTCTCAATACCACACAGTTCACAAGGACTCCGGCCTCTACAAGGACCTGCTGCACAAACTCCATCTGGCAAAAGTGGGAGACTGCATGGGGGAAGGTGGCGACCGGCCCATTCGTCGCAACAACAGCTACACCTCCTACACCATGGCTATAATCGGCATGCACGGAGACTTCAAGCCCAAAGAGTCTGAATTCCGCGCTTCAGAAGATGGAGACAAGGAAAAGGCCGGCGCCCAGGAGAGGAAGCGCATCCGAATGGACAGCTACACCAGTTACTGTAACGCAGTGGCAGAGAATGGTACCCCTGAAGACCTCGGCGAGGGGGAGGTCACTTTAGAGATGGTTGATGAAGATGCCGGGAGCAGCCGTAGTTCATTAGAGGAGGACAGAACCGATGCTGATAAACCTGAGGTGTCCATGCTCTTTCAGTTCCTGCAAATTCTCACCGCCTGTTTCGGCTCGTTTGCTCACGGAGGAAATGATGTCAGTAATGCAATTGGTCCCCTGGTTGCTCTCTGGCTGGTCTATGAGAGTGGGTCTGTTATATCGAGTGCACCGACTCCAATCTGGCTGCTGCTGTATGGAGGAGTGGGCATCTGTGTGGGCCTGTGGGTCTGGGGCCGTAGAGTCATCCAGACCATGGGCAGGGACCTGACCCCCATCACCCCATCAAGCGGTTTCAGCATCGAGCTCGCCTCCGCTGTCACTGTTGTGGTGGCTTCCAACATCGGTCTTCCAGTTTCCACTACTCACTGCAAGGTCGGGTCTGTGGTGGCTGTGGGGTGGCTGCGCTCCAGGAAAGCTGTGGACTGGCGGCTGTTCAGAAACATCTTCATGGCCTGGTTTGTCACGGTGCCCATTTCTGGCCTTATCAGCGCCGCCATCATGGCCCTTTTCACCTACGTCATTCTTTGAGGCCTCGAAGGTTCGCTCTGCCTCCCTCTCCGCTCGCACAGAGCCTCCACCTGCAACCAGGATCCCAAGAGAGTTGGAGGGCACGTCTCCATCTTCCCCTCCCGTCTCTCTTCATCTTCCCCCTCCTGTCATCCTCGTGATGAGCGAGGGTTGAAAAGGTCCCTTTGGAAAGAGCCTGCGATTCTTGGCTGCGTAATTCTTTTTAGCCTGTATTGATGATTTGTGCTTTGCACCAGATCACTTGCCATAGGCCAGGGAAGAAAATGTCTTCATATCTAAAATGGTTGCCATTTAAAATCCCTCTTGTACATATGTCAAATCAttgcgtttttgttttttatgtaattatgtaCAGAACTAAAAGGGTTTTTTAAggttaaaacaacaaaacaattacaaTGCAGTATTAGCCTTCATTTGACTTTCATTATACGAGTTTCTTAGAGAAGTGGAATTTGGGGATGAGGAATTGACCTGTGTTTTCCTTCTGTACATTCAGTATGCATGAGTTTCACTCTTTTCTTAAGCAGACTTTCAAACAGAGCCTTATGACACCCCAACTTTTAGGAGGCTTGTGAGGGTTGATTCGCAAAGGAAATTGGTTCACATTATGTTCCTTAATACAGTTTCAGTGTCCTTTTCCAgatgtcttttgttttatttttagttctttTATAGTTTACACTACAAAACTAAACAGTCTACACGCATTTAGAGTTCAGACGTTCTGTCTCCATTCATTCTTCAGTGGTTTACATAATATCTAACTTTGGTGTTTTGCACCGCTGTTAATATTAGCTCTGCTAGCTTCAGCAAGCGTTTAATACCAACTATAGCGGACCAGCCTGCACTTTAGGAGATACAGTTAAACATCTCAGCAAGATTCCTGCAAGCACAGAATGTGCTGAACGCTCTGCTGTAGTTAATATGCTCTTGGCAACTCTCTTACATGCAGCACGTCCCCAAATGTTTGCTGTAGACAATTGAACTCCATACGGTGGATTATGGCCCTTTGTTCTCTGTGATCATGGGTTACTGTTGTTGCATATGGATGAAGCGTTACTAGGACACCCAAACTCTAGCTTGACCAGTTCTACTACTGAGGCCAAAAGATCCTCCTTTAAGGGGTAAAAAAGGTCCTATAACCATCAATTGAAGTAACATTACCCCTGTTTTTCCTATTCGTCGCTTGACGTTTGAAACCTGATAAGTTTAAAAACATCCCATGAGCCTCTTCTCTTTCAGAGTATTACAGTAAAGCTTTGCGGTGGCGCTTGACTTCAGAAACAGTGAATTAAACTTTCATGAAGGTAGTGAAGTTTACTTGTGCTGGATTGGAGATCTTTGGCATTCCTCTAAAACTTGACGTATGGTGAAGCTCATCTGCTCCAGCCTTCTTATAGACCTTCTGTAGTACTTCTGTGGAATGTAAACCAATACAGacacagtatatgtatatattttacagcaaCATGAATGACTTACCCTATTTATTAGGCTGGGGTGAGATGGTGGTGTTAAATGCTGGTTTGGATTGCCTGTATAGCAGTAGCTCCATCAGTAGGTTTCTACAACCGTGTCTGAGAGGAGATGATCTGGTTATGATTTTAACACATTTAGACCTTACATAGTTGCTGTAGTtgccttaatatttttttaattaccatTTTTTTGGTtaccaaagaaaaataaaagtggATTGTTTATTGTCCGCTGGGCTTTGgggatgaaaaaataaaataaaatgtctttttgaGTA
>TCONS_00003947
CTTCTTTTCTGAAACTACCTATTTCTGGGACCCACTGCATCGTTGGAGCTACTATAGGCTTCTCGCTGGTTGCTAAAGGTCAGCAGGGAGTCAAATGGCTGGAGCTTCTCAGAATTATTGCTTCATGGTTCCTCTCGCCTTTGCTGTCCGGCGTCATGTCTGCCGTCCTTTTCTACTTTGTTCGCATGTTCATCTTGCAAAAGAAGGATCCAGTGCCCAATGGTCTGAGGGCCCTGCCATTTTTCTACGCTGTTACAATGGGCATCAACCTGTTTTCCATCATGTTTACCGGAGCACCGATGCTGGGCTTTGATAAGCTGCCCTGGTGGGGAGTGCTACTCATTTCCATCGGCTTTGGCATCATCACCGCCCTCATCGTTTGGTTTGCTGTTTGCCCACGACTCAAGAAGAAGATCGAATGTAAGTATTgatattttataattgtttaatctAATCATGaaaattttaaaatcaatgtattaaaaaaaatgcgTCATATCA
>TCONS_00003948
TGGAGCTACTATAGGCTTCTCGCTGGTTGCTAAAGGTCAGCAGGGAGTCAAATGGCTGGAGCTTCTCAGAATTATTGCTTCATGGTTCCTCTCGCCTTTGCTGTCCGGCGTCATGTCTGCCGTCCTTTTCTACTTTGTTCGCATGTTCATCTTGCAAAAGAAGGATCCAGTGCCCAATGGTCTGAGGGCCCTGCCATTTTTCTACGCTGTTACAATGGGCATCAACCTGTTTTCCATCATGTTTACCGGAGCACCGAGGCTCAGCAATTCAAGAAGTCAACTGGCCTGGGCCATTAAATGAAGGCTACAGGCCAGAGTATGATGCGATATGCACCCTTGGAGAGTGTGTACACATATGCACTCCCAGGCGGGTGCTCTTTACATAGTCACAGCAAGTGCTGGGCTTTGATAAGCTGCCCTGGTGGGGAGTGCTACTCATTTCCATCGGCTTTGGCATCATCACCGCCCTCATCGTTTGGTTTGCTGTTTGCCCACGACTCAAGAAGAAGATCGAATGTAAGTATTgatattttataattgtttaatctAATCATGaaaattttaaaatcaatgtattaaaaaaaatgcgTCATATCA

Function

symbol description
slc20a1b Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to act upstream of or within phosphate ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC20A1 (solute carrier family 20 member 1).

GO:

id name namespace
GO:0035435 phosphate ion transmembrane transport biological_process
GO:0006817 phosphate ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005315 inorganic phosphate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-260 Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to act upstream of or within phosphate ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC20A1 (solute carrier family 20 member 1).

Ensembl:

ensembl_id ENSDARG00000010641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003945 False 2815 mRNA 0.50 11 17713022 17726406
TCONS_00003946 False 3782 mRNA 0.47 10 17714866 17728165
TCONS_00003947 False 501 processed_transcript 0.44 4 17715906 17721131
TCONS_00003948 True 597 lncRNA 0.46 5 17715949 17721131

Neighbor

gene id symbol gene type direction distance location
XLOC_002035 dre-mir-218b coding upstream 17682 17695265 ~ 17695340 (+)
XLOC_002034 drg1 coding upstream 21851 17681074 ~ 17691171 (+)
XLOC_002033 kcnn2 coding upstream 38677 17592273 ~ 17674345 (+)
XLOC_002032 NA coding upstream 125145 17583381 ~ 17587877 (+)
XLOC_002031 NA coding upstream 215250 17459657 ~ 17497772 (+)
XLOC_002037 pigo coding downstream 19715 17747880 ~ 17759878 (+)
XLOC_002038 ccl19b coding downstream 48816 17776981 ~ 17780102 (+)
XLOC_002039 phf24 coding downstream 122769 17850934 ~ 17926298 (+)
XLOC_002040 BX927277.1 coding downstream 161924 17890089 ~ 17890203 (+)
XLOC_002041 prkab1a coding downstream 208276 17936441 ~ 17946163 (+)
XLOC_002030 dre-mir-301c non-coding upstream 258450 17454490 ~ 17454572 (+)
XLOC_002029 dre-mir-130c-1 non-coding upstream 259519 17453363 ~ 17453503 (+)
XLOC_002042 NA non-coding downstream 278958 18007123 ~ 18071506 (+)
XLOC_002043 NA non-coding downstream 512385 18240550 ~ 18282435 (+)
XLOC_002045 AL928714.1 non-coding downstream 1070762 18798927 ~ 18802435 (+)
XLOC_002056 CABZ01059627.3 non-coding downstream 1855124 19583289 ~ 19589733 (+)

Expression


Co-expression Network