XLOC_020362 (si:dkey-78l4.5)


Basic Information

Item Value
gene id XLOC_020362
gene name si:dkey-78l4.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19264181 ~ 19428807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040423
GTTTATTGATAGTCTTCATcatgaccatcatcatcatctctctaCTCCTGCTGGTTTCTCTGGAGCCACACCTGACCTTCACTGTGAATGGCAATGAAGCTACACCTCACTCCAGACCTTACATGGTCTCTGTTCAATTTAATGACATCCATTTCTGCGGTGGATTCCTCATCTCTGAAGAGTTTGCCTTGACTGCTGCACATTGCCGAAAGAAGTAagacttttgctttttttataatgACTGATTGCAGATGGAGGTTTTAAATGAAATAGCaacattatataatttttttctcatcAAATGCTCACAATGCTCTCCAAAACATATCCAATAACTGATAGAACTGTTCATCATACTGAAACTTTTTTCAGCAGTGCTGAAAAGCTGACAGTTGTGGTTGGTGCACATGACCTAAAAAATAAGGAAGAAGGTTCTGTCCGCATCAAAGTGAAGTCCTGCTACACGCATCCACACTTTGTTCAGAAAACTCTCCAGAATGACATCATGCTTTTGAAGcTCGAGAGAAACGTCAAACTGAGCCAAACTGTTCATCTGACTTCATTACCAAAGCAAAAAGAAGACACCAAAGCCGGCACTATCTGTAGTGTTTTTGGCTGGGGGAGACAGTACACTAATGGCCCACTGAGTGACCGGCTCTTGGAGACAGAAGTAAAAATAATGGAAAACATGCAATGCTTAAAACTGTGGAACAAAAGGGATGACATAAAAGTGAAATACTCAATCTCAAAGATGATGTGTGTGTACGGCCATGGTGGATCCTGCGAAGTACGTATGAAAGATGATTCAGACTTGATGTTAATGTACGAACCTGTTTCACCAGTGATGTGTTGATCTGTGTTTCATAACAGGGGGATTCAGGAGGTCCTTTGGTTTGTGAAGACACTGTTGTTGGCATCACGTCTTTTGGAAATCCTCACCTCTGTAATTCACGTTTGTTTCCAAATGTGTATACCAAAATTTCTGCATACCATGATTGGATCtggaaaataattaacaaacaaaagtaagaCATATGTGCTTGAATTCTTGCATAAACATCCTATAAACCATATTTGCTTTCAATAAATGATTACATGGCAGGCATC
>TCONS_00040424
GATAGTCTTCATcatgaccatcatcatcatctctctaCTCCTGCTGGTTTCTCTGGAGCCACACCTGACCTTCACTGATGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAACAGCTGGCATATCTGTGGTGGATTCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGGAAAAAGGTGATGCCCTCACAGTTGTGGTTGGCACCCATGATTTGAGTGAAAAAAATTATTGCAACATCTTTAAAGTGACATCCTACTTCCCGCACCCAGACTATAACTCTGAAACTATGAAGAATGATATCATGCTTTTAAAGCTAAATACAAAAGTCAGACTGAACAACAACGTTGGACTGATATCATTATCAAAGAAGAGAAAAGATGTTAAAGCAGATACTGTGTGTAGTGTTGCTGGTTGGGGAAGACTGTGGAAGAATGGCCCAAAGACTAACTGTCTAAGAGAGGCAGAGACAATTATAGTGAATCGTGCAGAGTGTGAACGCAGATGGAAATCTTTATATAAGGCCTCAAAGATGATCTGTGTTTATGGCCATGGTGGATCCTGC
>TCONS_00040425
GATAGTCTTCATcatgaccatcatcatcatctctctaCTCCTGCTGGTTTCTCTGGAGCCACACCTGACCTTCACTGCTCGTGTGGACATAGATGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAACAGCTGGCATATCTGTGGTGGATTCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGGAAAAAGGTGATGCCCTCACAGTTGTGGTTGGCACCCATGATTTGAGTGAAAAAAATTATTGCAACATCTTTAAAGTGACATCCTACTTCCCGCACCCAGACTATAACTCTGAAACTATGAAGAATGATATCATGCTTTTAAAGCTAAATACAAAAGTCAGACTGAACAACAACGTTGGACTGATATCATTATCAAAGAAGAGAAAAGATGTTAAAGCAGATACTGTGTGTAGTGTTGCTGGTTGGGGAAGACTGTGGAAGAATGGCCCAAAGACTAACTGTCTAAGAGAGGCAGAGACAATTATAGTGAATCGTGCAGAGTGTGAACGCAGATGGAAATCTTTATATAAGGCCTCAAAGATGATCTGTGTTTATGGCCATGGTGGATCCTGCAATgggGATTCAGGAGGTCCATTGGTTTGTAATAACACTGCTGTTGGTATCACAGCTTTTGGTGACCTTTATCTCTGTAATTAACGTTTGCGTCCTAATGTGTATACTAGGATTTCAGCATATATTCCATGGATCCACAACATAACTGGAAAGGTTTAGTGACTTCATGAAAAAAGgaagaaatgttttttaattcttcCATAAATCTTTCAATAAAAGTATCAAATGGCAAGCATC
>TCONS_00040446
ATCATGTCACCTAAAAAAATCTGACAGCTTAATGTCTCCACCcactttcaaaatatatttagtttcatCAGCAGGAGCTCACTGATTGCTTCCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGCCACCACACCTGACCTTCACTGTGAATGGCAATGAAGCTACACCTCACTCCAGACCTTACATGGTCTCTGTTCAATTTAATGACATCCATTTCTGCGGTGGATTCCTCATCTCTGAAGAGTTTGCCTTGACTGCTGCACATTGCCGAAAGAAGTAagacttttgctttttttataatgACTGATTGCAGATGGAGGTTTTAAATGAAATAGCaacattatataatttttttctcatcAAATGCTCACAATGCTCTCCAAAACATATCCAATAACTGATAGAACTGTTCATCATACTGAAACTTTTTTCAGCAGTGCTGAAAAGCTGACAGTTGTGGTTGGTGCACATGACCTAAAAAATAAGGAAGAAGGTTCTGTCCGCATCAAAGTGAAGTCCTGCTACACGCATCCACACTTTGTTCAGAAAACTCTCCAGAATGACATCATGCTTTTGAAGcTCGAGAGAAACGTCAAACTGAGCCAAACTGTTCATCTGACTTCATTACCAAAGCAAAAAGAAGACACCAAAGCCGGCACTATCTGTAGTGTTTTTGGCTGGGGGAGACAGTACACTAATGGCCCACTGAGTGACCGGCTCTTGGAGACAGAAGTAAAAATAATGGAAAACATGCAATGCTTAAAACTGTGGAACAAAAGGGATGACATAAAAGTGAAATACTCAATCTCAAAGATGATGTGTGTGTACGGCCATGGTGGATCCTGCGAAGTACGTATGAAAGATGATTCAGACTTGATGTTAATGTACGAACCTGTTTCACCAGTGATGTGTTGATCTGTGTTTCATAACAGGGGGATTCAGGAGGTCCTTTGGTTTGTGAAGACACTGTTGTTGGCATCACGTCTTTTGGAAATCCTCACCTCTGTAATTCACGTTTGTTTCCAAATGTGTATACCAAAATTTCTGCATACCATGATTGGATCtggaaaataattaacaaacaaaagtaagaCATATGTGCTTGAATTCTTGCATAAACATCCTATAAACCATATTTGCTTTCAATAAATGATTACATGGCAGGCATC
>TCONS_00040447
CAGCAGGAGCTCACTGATTGCTTCCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGCCACCACACCTGACCTTCACTGTGAATGGCAATGAAGCTACACCTCACTCCAGACCTTACATGGTCTCTGTTCAATTTAATGACATCCATTTCTGCGGTGGATTCCTCATCTCTGAAGAGTTTGCCTTGACTGCTGCACATTGCCGAAAGAATGCTGAAAAGCTGACAGTTGTGGTTGGTGCACATGACCTAAAAAATAAGGAAGAAGGTTCTGTCCGCATCAAAGTGAAGTCCTGCTACACGCATCCACACTTTGTTCAGAAAACTCTCCAGAATGACATCATGCTTTTGAAGcTCGAGAGAAACGTCAAACTGAGCCAAACTGTTCATCTGACTTCATTACCAAAGCAAAAAGAAGACACCAAAGCCGGCACTATCTGTAGTGTTTTTGGCTGGGGGAGACAGTACACTAATGGCCCACTGAGTGACCGGCTCTTGGAGACAGAAGTAAAAATAATGGAAAACATGCAATGCTTAAAACTGTGGAACAAAAGGGATGACATAAAAGTGAAATACTCAATCTCAAAGATGATGTGTGTGTACGGCCATGGTGGATCCTGCGAAGGGGATTCAGGAGGTCCTTTGGTTTGTGAAGACACTGTTGTTGGCATCACGTCTTTTGGAAATCCTCACCTCTGTAATTCACGTTTGTTTCCAAATGTGTATACCAAAATTTCTGCATACCATGATTGGATCtggaaaataattaacaa

Function

symbol description
si:dkey-78l4.5 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-539 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.
ZDB-GENE-060503-930 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000071310 ENSDARG00000092518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040423 False 1107 mRNA 0.40 3 19264181 19428807
TCONS_00040424 False 595 mRNA 0.42 4 19264188 19265457
TCONS_00040425 False 847 mRNA 0.40 5 19264188 19265780
TCONS_00040446 False 1183 mRNA 0.40 3 19425657 19428807
TCONS_00040447 True 783 mRNA 0.44 5 19425725 19428719

Neighbor

gene id symbol gene type direction distance location
XLOC_020361 si:dkey-21e2.10 coding upstream 13447 19247255 ~ 19250734 (+)
XLOC_020360 BX927243.1 coding upstream 25955 19237031 ~ 19238226 (+)
XLOC_020359 si:dkey-21e2.7 coding upstream 30262 19218733 ~ 19233919 (+)
XLOC_020357 si:dkey-21e2.3 coding upstream 80675 19175651 ~ 19183506 (+)
XLOC_020356 fgf22 coding upstream 107849 19111444 ~ 19156332 (+)
XLOC_020370 si:dkey-78l4.6 coding downstream 25015 19453822 ~ 19455139 (+)
XLOC_020371 si:dkey-78l4.7 coding downstream 44997 19473804 ~ 19476271 (+)
XLOC_020372 si:dkey-78l4.8 coding downstream 49333 19478140 ~ 19482177 (+)
XLOC_020373 si:dkey-21e2.3 coding downstream 57904 19486711 ~ 19491728 (+)
XLOC_020374 si:dkey-78l4.10 coding downstream 66189 19494996 ~ 19496507 (+)
XLOC_020351 NA non-coding upstream 667923 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 959893 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 972384 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1439608 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 342891 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 364312 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 410468 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 582989 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 710718 20139525 ~ 20139592 (+)

Expression


Co-expression Network