XLOC_020366 (si:dkey-21e2.16)


Basic Information

Item Value
gene id XLOC_020366
gene name si:dkey-21e2.16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19311411 ~ 19313738 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040436
TTACTGAGAGCTAACAGATTGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCAGACCTGACCTACACTGAGGACGGCACTGAAGCTAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGATAAAAGGCTGGCATATCTGTGGTGGATCCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGGAAAAAGGGGATGTCATCACTGTTGTGGTTGGCGCCCATGATTTGAGTGGAAATAAAACTTACGACAGCTTTGATGTGACATCCTACATCCCACATCCCGACTATAAACAGAGTTCTTATAAGAATGACATCCTGCTTTTGAAGCTAAATAAAAAAGTCACACTGAGCAACAATGTTGGACTGATATCGCTACCAAAGGAAGGAGAAAATGTTGAAGCAGATACTCTCTGTAGTGTTGCTGGCTGGGGAAGACTGTGGGTCAGAGGCCCAAGACCTGGTCATCTCAGAGAGGCAGATACAGTGATAATGACTGATGAAGAGTGTAAACGCAGATGGGAAATTAAATTTAAGGTCTCAAAGATGATCTGTGTTTATGGCCATGGAGGATCCTGCAGTGGGGATTCAGGAGGTCCTTTGGTTTGTGGAGACACTGTTGTTGGGGTCACATCCTTCACTGACCGTTATCTCTGCAATTCACGTTTGCGTCCGAATGTGTATGCTAAGATTT
>TCONS_00040437
TTACTGAGAGCTAACAGATTGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCAGACCTGACCTACACTGCTCGTGTGGGTATAGAGGACGGCACTGAAGCTAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGATAAAAGGCTGGCATATCTGTGGTGGATCCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGGAAAAAGGGGATGTCATCACTGTTGTGGTTGGCGCCCATGATTTGAGTGGAAATAAAACTTACGACAGCTTTGATGTGACATCCTACATCCCACATCCCGACTATAAACAGAGTTCTTATAAGAATGACATCCTGCTTTTGAAGCTAAATAAAAAAGTCACACTGAGCAACAATGTTGGACTGATATCGCTACCAAAGGAAGGAGAAAATGTTGAAGCAGATACTCTCTGTAGTGTTGCTGGCTGGGGAAGACTGTGGGTCAGAGGCCCAAGACCTGGTCATCTCAGAGAGGCAGATACAGTGATAATGACTGATGAAGAGTGTAAACGCAGATGGGAAATTAAATTTAAGGTCTCAAAGATGATCTGTGTTTATGGCCATGGAGGATCCTGCAGTGGGGATTCAGGAGGTCCTTTGGTTTGTGGAGACACTGTTGTTGGGGTCACATCCTTCACTGACCGTTATCTCTGCAATTCACGTTTGCGTCCGAATGTGTATGCTAAGATTTCAGCATATATTCCATGGATCAAAATGATAACTGAAAATGTTTAGTGACATCTTGAAGAATGACTAAAAAAGGAAGACGTGTTTTTTCTTGAATTCTTCCATAAATCTTTCAATAAAAGATTTCATCATGATCAAGCATC

Function

symbol description
si:dkey-21e2.16 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-698 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000094077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040436 False 726 mRNA 0.45 5 19311411 19313599
TCONS_00040437 True 880 mRNA 0.43 5 19311411 19313738

Neighbor

gene id symbol gene type direction distance location
XLOC_020365 si:dkey-21e2.15 coding upstream 20150 19289970 ~ 19291261 (+)
XLOC_020364 si:dkey-21e2.14 coding upstream 26111 19283978 ~ 19285300 (+)
XLOC_020363 si:dkey-21e2.13 coding upstream 32158 19277361 ~ 19279253 (+)
XLOC_020358 si:dkey-21e2.8 coding upstream 43131 19188809 ~ 19268280 (+)
XLOC_020367 si:dkey-21e2.12 coding downstream 51482 19365220 ~ 19367446 (+)
XLOC_020368 si:dkey-78l4.2 coding downstream 91779 19405517 ~ 19408101 (+)
XLOC_020369 si:dkey-78l4.4 coding downstream 101342 19415080 ~ 19417750 (+)
XLOC_020370 si:dkey-78l4.6 coding downstream 140084 19453822 ~ 19455139 (+)
XLOC_020371 si:dkey-78l4.7 coding downstream 160066 19473804 ~ 19476271 (+)
XLOC_020360 BX927243.1 non-coding upstream 73185 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 715153 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1007123 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1019614 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1486838 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 457960 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 479381 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 525537 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 698058 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 825787 20139525 ~ 20139592 (+)

Expression


Co-expression Network