XLOC_020367 (si:dkey-21e2.12)


Basic Information

Item Value
gene id XLOC_020367
gene name si:dkey-21e2.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19365220 ~ 19367446 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040438
ATGTCTCCACCCTTATTTTCTGTATATTTATACCGTGTTTTGTCATTGCGAGCTCACGGAGTCTTTATCATGACAATCATCATCATCTCTCTGCTCCTGCTGGTTTCTCTTGTGCCAGACCTGACCTTCACTGCTGGTGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAAAGGATGGCATAGCTGTGGTGGATTCCTCATTACTGAGCAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAAGGTGATGTCATCACAGTTGTGGTTGGCGCCCATGATTTGAGTGAAAATGAAATTTACAACTCCTTTAAAGTGACATCCTACATCCCGCATGAAGACTATAAACTGAATTCTGATCGCAATGACATCATGCTTTTAAAGCTAAATAAAAAAGTCAGACTGAGCAAGAATGTTGGACTGATATCATTACCAAAGAAAGGAGAAGATGTTAAAGCAGATACTGTGTGTAGTATTACTGGTTGGGGAAGACTGTGGAGAAAAGGCGCAAAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGAATGATGCAGAGTGTGAACGCAGATGGGAATCTGATTATGTGGCCTCAAAGATGATCTGTGCTTATGGCCATGGTGGAACTTGCAGTGGGGATTCTGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGTATCACATCTTTCAGTGACCGTTATCTCTGTAAGTCACGTTTGCTTCCTGATGTGTATACTAGGATTTCAGCATTTCTTCCATGGATCCACAACATAACTGGAAATGTTTAG
>TCONS_00040439
CTCACGGAGTCTTTATCATGACAATCATCATCATCTCTCTGCTCCTGCTGGTTTCTCTTGTGCCAGACCTGACCTTCACTGCTGGTGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAAAGGATGGCATAGCTGTGGTGGATTCCTCATTACTGAGCAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAAGGTGATGTCATCACAGTTGTGGTTGGCGCCCATGATTTGAGTGAAAATGAAATTTACAACTCCTTTAAAGTGACATCCTACATCCCGCATGAAGACTATAAACTGAATTCTGATCGCAATGACATCATGCTTTTAAAGCTAAATAAAAAAGTCAGACTGAGCAAGAATGTTGGACTGATATCATTACCAAAGAAAGGAGAAGATGTTAAAGCAGATACTGTGTGTAGTATTACTGGTTGGGGAAGACTGTGGAGAAAAGGCGCAAAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGAATGATGCAGAGTGTGAACGCAGATGGGAATCTGATTATGTGGCCTCAAAGATGATCTGTGCTTATGGCCATGGTGGAACTTGCAGGGGATTCTGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGTATCACATCTTTCAGTGACCGTTATCTCTGTAAGTCACGTTTGCTTCCTGATGTGTATACTAGGATTT
>TCONS_00040440
ATGACAATCATCATCATCTCTCTGCTCCTGCTGGTTTCTCTTGTGCCAGACCTGACCTTCACTGGTGAGACTGACTATACAAATGATGATTTTGGCATTAAAATATTAGCTTTTAATGTACAGAGTAATTTGACTACCAACTATTTCTATTTATTAACACCTATGCTTTCAGCTGGTGTGGGTATAGAGGACGGCACTGAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAAAGGATGGCATAGCTGTGGTGGATTCCTCATTACTGAGCAGTTTGTCTTGACTGCTGCACATTGCTGGAAGAAAGGTGATGTCATCACAGTTGTGGTTGGCGCCCATGATTTGAGTGAAAATGAAATTTACAACTCCTTTAAAGTGACATCCTACATCCCGCATGAAGACTATAAACTGAATTCTGATCGCAATGACATCATGCTTTTAAAGCTAAATAAAAAAGTCAGACTGAGCAAGAATGTTGGACTGATATCATTACCAAAGAAAGGAGAAGATGTTAAAGCAGATACTGTGTGTAGTATTACTGGTTGGGGAAGACTGTGGAGAAAAGGCGCAAAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGAATGATGCAGAGTGTGAACGCAGATGGGAATCTGATTATGTGGCCTCAAAGATGATCTGTGCTTATGGCCATGGTGGAACTTGCAGTGGGGATTCTGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGTATCACATCTTTCAGTGACCGTTATCTCTGTAAGTCACGTTTGCTTCCTGATGTGTATACTAGGATTTCAGCATTTCTTCCATGGATCCACAACATAACTGGAAATGTTTAG
>TCONS_00040441
AGCTAAATAAAAAAGTCAGACTGAGCAAGAATGTTGGACTGATATCATTACCAAAGAAAGGAGAAGATGTTAAAGCAGATACTGTGTGTAGTATTACTGGTTGGGGAAGACTGTGGAGAAAAGGCGCAAAGACTGATCGTCTAAGAGAGGCAGAGACAGTTATAATGAATGATGCAGAGTGTGAACGCAGATGGGAATCTGATTATGTGGCCTCAAAGATGATCTGTGCTTATGGCCATGGTGGAACTTGCAGTGGGGATTCTGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGTATCACATCTTTCAGTGACCGTTATCTCTGTAAGTCACGTTTGCTTCCTGATGTGTATACTAGGATTTCAGCATTTCTTCCATGGATCCACAACATAACTGGAAATGTTTAGTGActtcatgaaaaataaataatgttaagaaGTTTTTCTTCTAAATTCTTCTATAAATCTTTCAATAAAAGTATCAAATGGCAAGCATC

Function

symbol description
si:dkey-21e2.12 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-697 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000093415

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040438 False 825 mRNA 0.43 5 19365220 19367357
TCONS_00040439 False 727 mRNA 0.43 5 19365272 19367313
TCONS_00040440 False 864 mRNA 0.41 4 19365289 19367357
TCONS_00040441 True 499 mRNA 0.39 2 19366866 19367446

Neighbor

gene id symbol gene type direction distance location
XLOC_020366 si:dkey-21e2.16 coding upstream 51482 19311411 ~ 19313738 (+)
XLOC_020365 si:dkey-21e2.15 coding upstream 73959 19289970 ~ 19291261 (+)
XLOC_020364 si:dkey-21e2.14 coding upstream 79920 19283978 ~ 19285300 (+)
XLOC_020363 si:dkey-21e2.13 coding upstream 85967 19277361 ~ 19279253 (+)
XLOC_020358 si:dkey-21e2.8 coding upstream 96940 19188809 ~ 19268280 (+)
XLOC_020368 si:dkey-78l4.2 coding downstream 38071 19405517 ~ 19408101 (+)
XLOC_020369 si:dkey-78l4.4 coding downstream 47634 19415080 ~ 19417750 (+)
XLOC_020370 si:dkey-78l4.6 coding downstream 86376 19453822 ~ 19455139 (+)
XLOC_020371 si:dkey-78l4.7 coding downstream 106358 19473804 ~ 19476271 (+)
XLOC_020372 si:dkey-78l4.8 coding downstream 110694 19478140 ~ 19482177 (+)
XLOC_020360 BX927243.1 non-coding upstream 126994 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 768962 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1060932 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1073423 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1540647 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 404252 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 425673 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 471829 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 644350 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 772079 20139525 ~ 20139592 (+)

Expression


Co-expression Network