XLOC_020368 (si:dkey-78l4.2)


Basic Information

Item Value
gene id XLOC_020368
gene name si:dkey-78l4.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19405517 ~ 19408101 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040442
TAGAGAGCTCACTGATAGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCAGACCTGACCTACACTGCTCGTGTGGGTATAGAGGACGGCACTAAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAAAGGATGGCATAGCTGTGGTGGATTCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGAAAAAAGGTGATGTCATCACGGTTGGGGTTGGCGCCCATGATTTGAGTGGAAATGAAATTTACGACACCTTTGAAGTGACATCCTACATCCCACATCCTGAGTATAAACTCAATTCTGATCGGAATGACGTCATGCTTTTGAAGCTAAATAAAAAAGTCAGACTGAGCCACAATGTTGGACTGATATCACTACCAAAGGATGGAGAAGATGTTGAAGCAGATATTCTCTGTAGTGTTGCTGGTTGGGGAAGACTGTGGTCAAAAGGCCCAAGTCCAGATCGTCTAAGAGAGGCAGAGACAGTAATTGTGAATGATGCAGAGTGTGAACGCAGATGGAACAAGACTTACAAGGCTTCAAAGATGATCTGTGCTTATGGCCATGGTGGATCCTGCAGGGGATTCTGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGTATCACTTCTTTCGGTGACCGTTATCTCTGTAATTCACGTTTGCTTCCTAACGTGTATACTAGGATTTCAGCATATCTTCCATGGATCCACAACATAACTGGAAATgtttataaaaagaaataatcttgagatgtttttttttttcattcttccaTAAATCTTTTAATAAAAGTATCAAATGGCAAGCATC
>TCONS_00040443
GAGAGCTCACTGATAGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCAGACCTGACCTACACTGCTCGTGTGGGTATAGAGGACGGCACTAAAGCAAAACCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAAAAAGGATGGCATAGCTGTGGTGGATTCCTCATTACTGAACAGTTTGTCTTGACTGCTGCACATTGCTGGAAAAAAGGTGATGTCATCACGGTTGGGGTTGGCGCCCATGATTTGAGTGGAAATGAAATTTACGACACCTTTGAAGTGACATCCTACATCCCACATCCTGAGTATAAACTCAATTCTGATCGGAATGACGTCATGCTTTTGAAGCTAAATAAAAAAGTCAGACTGAGCCACAATGTTGGACTGATATCACTACCAAAGGATGGAGAAGATGTTGAAGCAGATATTCTCTGTAGTGTTGCTGGTTGGGGAAGACTGTGGTCAAAAGGCCCAAGTCCAGATCGTCTAAGAGAGGCAGAGACAGTAATTGTGAATGATGCAGAGTGTGAACGCAGATGGAACAAGACTTACAAGGCTTCAAAGATGATCTGTGCTTATGGCCATGGTGGATCCTGCAGTGGGGATTCTGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGTATCACTTCTTTCGGTGACCGTTATCTCTGTAATTCACGTTTGCTTCCTAACGTGTATACTAGGATTTCAGCATATCTTCCATGGATCCACAACATAACTGGAAATgtttataaaaagaaataa
>TCONS_00040444
AGCTAAATAAAAAAGTCAGACTGAGCCACAATGTTGGACTGATATCACTACCAAAGGATGGAGAAGATGTTGAAGCAGATATTCTCTGTAGTGTTGCTGGTTGGGGAAGACTGTGGTCAAAAGGCCCAAGTCCAGATCGTCTAAGAGAGGCAGAGACAGTAATTGTGAATGATGCAGAGTGTGAACGCAGATGGAACAAGACTTACAAGGCTTCAAAGATGATCTGTGCTTATGGCCATGGTGGATCCTGCAGTGGGGATTCTGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGTATCACTTCTTTCGGTGACCGTTATCTCTGTAATTCACGTTTGCTTCCTAACGTGTATACTAGGATTTCAGCATATCTTCCATGGATCCACAACATAACTGGAAATgtttataaaaagaaataatcttgagatgtttttttttttcattcttccaTAAATCTTTTAATAAAAGTATCAAATGGCAAGCATC

Function

symbol description
si:dkey-78l4.2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-647 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000095384

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040442 False 859 mRNA 0.42 5 19405517 19408101
TCONS_00040443 False 792 mRNA 0.44 5 19405519 19408034
TCONS_00040444 True 489 mRNA 0.40 2 19407531 19408101

Neighbor

gene id symbol gene type direction distance location
XLOC_020367 si:dkey-21e2.12 coding upstream 38071 19365220 ~ 19367446 (+)
XLOC_020366 si:dkey-21e2.16 coding upstream 91779 19311411 ~ 19313738 (+)
XLOC_020365 si:dkey-21e2.15 coding upstream 114256 19289970 ~ 19291261 (+)
XLOC_020364 si:dkey-21e2.14 coding upstream 120217 19283978 ~ 19285300 (+)
XLOC_020363 si:dkey-21e2.13 coding upstream 126264 19277361 ~ 19279253 (+)
XLOC_020369 si:dkey-78l4.4 coding downstream 6979 19415080 ~ 19417750 (+)
XLOC_020370 si:dkey-78l4.6 coding downstream 45721 19453822 ~ 19455139 (+)
XLOC_020371 si:dkey-78l4.7 coding downstream 65703 19473804 ~ 19476271 (+)
XLOC_020372 si:dkey-78l4.8 coding downstream 70039 19478140 ~ 19482177 (+)
XLOC_020373 si:dkey-21e2.3 coding downstream 78610 19486711 ~ 19491728 (+)
XLOC_020360 BX927243.1 non-coding upstream 167291 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 809259 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1101229 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1113720 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1580944 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 363597 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 385018 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 431174 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 603695 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 731424 20139525 ~ 20139592 (+)

Expression


Co-expression Network