G94365 (LOC106577185)


Basic Information

Item Value
gene id G94365
gene name LOC106577185
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83778531 ~ 83780961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU104030
TCAGATAGTTTCTTGGAGGGGGTGTTAAGCAGATTCTTAGTGGGCGTGTCCAGGAACCTGAGGGGCGATTCCAGGAAGCTGTTCACGTTGTGTTTGGTGGGTGTCGACTCCTCCGATAGATCCAAATCGCCATTAGCTGACGTGGACAAGACGGTGACCGGACCGGACCTCTCCACTTTGTAATACCCCTGCTGTTGACCCACAGAGGAGTAGCCATTGGATAAACCATGGTTCAACCCGGTTCTGTGGTTGTTAGAGTCTATGCTGGTGAAACTGGGGATAGTGGAGCTAGCCTTTAGGTTAGCACCGTGCTGCTGCCCAACGTAGGGCTGCGATACCTGAGAATACAATCCTCTTTCACAATCATGTCCttgtccaactccttgtccttgTAAAGGGTCCAGGTGACCGTTGAAATGCGACCACTGTTGGTTGTCATGACCATAACCTTGACTTCGACCACGATCGACGGCTCCAGAGGTTTTGTGGTATTTGACCCCACTGTGGGCGTTACTGTAGTAAAAGAGCTGCCGTCGTTCCTCCTGAGCCTCAGTCAGGTACCTCTTCAGATCCATCTGGGCCTGAGGCAGGAACAGGCTCCTCTTGTGGCTGAGCGATGATGTCTTCGGCTGGGGCAGAACCTTCTGGACCCTGGCTCTGTGGGGGGTCTTGCCGTTGGGTATTCGTTTGTACAGGGGGGTACGGTTGTTGGGTTTGCAGCCCTCCTCTTCCAGCCCCTCCGTTCCCTTCTTCTTCCTAGGTTTAGAAAGTGTGGTCCTGGGTTTCTTCACAGGGGTCTTCTTGTGGTTGGGTGGTGCTTGTTCAGAGTTGTAGTTGTACTTGATGGCTGAGACTGGAGTTCCTCTGGGAGGGTTGTTCTCTGAGTGCTGGGAGGGGTGGAAACCCTGCTGCTTGTGACGTGATTGGATGATGAACGCCAACTCGGCAAGTTGAGCCGCCACCTCTTCCTCATCCCTGTTCCTCCCGCTCTTACCCATCGTCCTCTCTATTGTTTCCTTGCTgttcctctccatgtctttccGCTGTCTGAAAGTGCCTTCGCCCCTGTTATGTTGAGAACCAAGGCCTTGGTCTGCTCTCCTGTACAGGTGTTGTCCTGCTCTCTCGGTGCTGTCGTAGGGAAGTCTGTCACAGTCCGAGCTGGCTTCTAGCAGGTCCTGTAGGGACAGGTTGCCAGTGGCTGCGGGGCTACGGGAATGACACTGGATGACATGAGCTTGTCTGGCCACTGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCTGATCACTAGAACTTTGTTGGAGCCCTGGAGAGGGGTGTTTCTATTGGATAAGTGCATGGAAGATGTTGTGGGGTTTTCACCCTGTGCGTTGGTTCTAAAGGGTTCTGGTGAGTTTTGTGGGATAGCTGCCAGTAAGGTTAGCGCCTCGATAGCGATAGCCTGGTCATTGCTAATATTCCTCTCTTCTACCAAAGACTGGATGCTTGGCTGAGAGAGATCTGGAGAGGGTTGCTCTCGTTTGACAATAATGTCGAGAGCTTTTCGTGGACTGATGGGAGCACTTTTCAAGCAAATATCCACCTTAAAGTCCTCCGGCTCTGTTTTGAACGAGCGTAGCACCGGGGAACGGGAGCTACACAACTTCTCCTCCAGACCCTTCCTGTCTGTGATAGAGAAACACACCACGGCTGCTAGCGTGGACAGAGCGTCCTCATAGACATCGTCATCATCGCCCCCTAGTGGGGCGGAGGACTGGTCCATGGACCACACCCACGGTTCCTCCACCTTTATCTTTTTCAGAGGAACAGCTATGCTGTCGTCCAGAAGTGCATCCTTCAGCTCAGAGCTGCCTTTGGGGTACGTAGATTTTGTAGTACTTTGGGACTCTAATTGTATTGTGGTATTTTGGGACTCAGGTGACAACTGATGTGATTCCGGACCAGCAATCAGTTGAGCACCGTTGGTTTTAGCCATGTTTTCGTTAGCACCGTTGGTTTTAGCCATGTTTTCGTTAGCACCGTTGTGAAAAGTCCCAGAAGAAGAGCAGTGGTGCTGTAGAAGAAGTCCATCATTGGTGTCCTCCAGGCCAGGCTCTCTCTTGATAAGTGCTGCTGGTCGTCCATCTCGGATTGGGGCAAGAGTGTGGACGTGGGGAGGGTgtgtgaagtggtgtgtgtgaggTATGTGACCCTCTTCGTCGTCCTCCGCTGCCGTATAGGTGTCCTCTGCCATCTGGACAGGGCCTCTTCCATTAACTGAGCTGTCCTCTGGA
>TU104031
TCattatcctcatcatcatcattatcatcatcattatcctcatcattatcatcctcatcattatcatcctcatcatcatcatcatcagggtGACTCACTCATGCATCCACAGGAGGGGATCTCAGATAGTTTCTTGGAGGGGGTGTTAAGCAGATTCTTAGTGGGCGTGTCCAGGAACCTGAGGGGCGATTCCAGGAAGCTGTTCACGTTGTGTTTGGTGGGTGTCGACTCCTCCGATAGATCCAAATCGCCATTAGCTGACGTGGACAAGACGGTGACCGGACCGGACCTCTCCACTTTGTAATACCCCTGCTGTTGACCCACAGAGGAGTAGCCATTGGATAAACCATGGTTCAACCCGGTTCTGTGGTTGTTAGAGTCTATGCTGGTGAAACTGGGGATAGTGGAGCTAGCCTTTAGGTTAGCACCGTGCTGCTGCCCAACGTAGGGCTGCGATACCTGAGAATACAATCCTCTTTCACAATCATGTCCttgtccaactccttgtccttgTAAAGGGTCCAGGTGACCGTTGAAATGCGACCACTGTTGGTTGTCATGACCATAACCTTGACTTCGACCACGATCGACGGCTCCAGAGGTTTTGTGGTATTTGACCCCACTGTGGGCGTTACTGTAGTAAAAGAGCTGCCGTCGTTCCTCCTGAGCCTCAGTCAGGTACCTCTTCAGATCCATCTGGGCCTGAGGCAGGAACAGGCTCCTCTTGTGGCTGAGCGATGATGTCTTCGGCTGGGGCAGAACCTTCTGGACCCTGGCTCTGTGGGGGGTCTTGCCGTTGGGTATTCGTTTGTACAGGGGGGTACGGTTGTTGGGTTTGCAGCCCTCCTCTTCCAGCCCCTCCGTTCCCTTCTTCTTCCTAGGTTTAGAAAGTGTGGTCCTGGGTTTCTTCACAGGGGTCTTCTTGTGGTTGGGTGGTGCTTGTTCAGAGTTGTAGTTGTACTTGATGGCTGAGACTGGAGTTCCTCTGGGAGGGTTGTTCTCTGAGTGCTGGGAGGGGTGGAAACCCTGCTGCTTGTGACGTGATTGGATGATGAACGCCAACTCGGCAAGTTGAGCCGCCACCTCTTCCTCATCCCTGTTCCTCCCGCTCTTACCCATCGTCCTCTCTATTGTTTCCTTGCTgttcctctccatgtctttccGCTGTCTGAAAGTGCCTTCGCCCCTGTTATGTTGAGAACCAAGGCCTTGGTCTGCTCTCCTGTACAGGTGTTGTCCTGCTCTCTCGGTGCTGTCGTAGGGAAGTCTGTCACAGTCCGAGCTGGCTTCTAGCAGGTCCTGTAGGGACAGGTTGCCAGTGGCTGCGGGGCTACGGGAATGACACTGGATGACATGAGCTTGTCTGGCCACTGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCTGATCACTAGAACTTTGTTGGAGCCCTGGAGAGGGGTGTTTCTATTGGATAAGTGCATGGAAGATGTTGTGGGGTTTTCACCCTGTGCGTTGGTTCTAAAGGGTTCTGGTGAGTTTTGTGGGATAGCTGCCAGTAAGGTTAGCGCCTCGATAGCGATAGCCTGGTCATTGCTAATATTCCTCTCTTCTACCAAAGACTGGATGCTTGGCTGAGAGAGATCTGGAGAGGGTTGCTCTCGTTTGACAATAATGTCGAGAGCTTTTCGTGGACTGATGGGAGCACTTTTCAAGCAAATATCCACCTTAAAGTCCTCCGGCTCTGTTTTGAACGAGCGTAGCACCGGGGAACGGGAGCTACACAACTTCTCCTCCAGACCCTTCCTGTCTGTGATAGAGAAACACACCACGGCTGCTAGCGTGGACAGAGCGTCCTCATAGACATCGTCATCATCGCCCCCTAGTGGGGCGGAGGACTGGTCCATGGACCACACCCACGGTTCCTCCACCTTTATCTTTTTCAGAGGAACAGCTATGCTGTCGTCCAGAAGTGCATCCTTCAGCTCAGAGCTGCCTTTGGGGTACGTAGATTTTGTAGTACTTTGGGACTCTAATTGTATTGTGGTATTTTGGGACTCAGGTGACAACTGATGTGATTCCGGACCAGCAATCAGTTGAGCACCGTTGGTTTTAGCCATGTTTTCGTTAGCACCGTTGGTTTTAGCCATGTTTTCGTTAGCACCGTTGTGAAAAGTCCCAGAAGAAGAGCAGTGGTGCTGTAGAAGAAGTCCATCATTGGTGTCCTCCAGGCCAGGCTCTCTCTTGATAAGTGCTGCTGGTCGTCCATCTCGGATTGGGGCAAGAGTGTGGACGTGGGGAGGGTgtgtgaagtggtgtgtgtgaggTATGTGACCCTCTTCGTCGTCCTCCGCTGCCGTATAGGTGTCCTCTGCCATCTGGACAGGGCCTCTTCCA
>TU104025
AGAGGAGTAGCCATTGGATAAACCATGGTTCAACCCGGTTCTGTGGTTGTTAGAGTCTATGCTGGTGAAACTGGGGATAGTGGAGCTAGCCTTTAGGTTAGCACCGTGCTGCTGCCCAACGTAGGGCTGCGATACCTGAGAATACAATCCTCTTTCACAATCATGTCCttgtccaactccttgtccttgTAAAGGGTCCAGGTGACCGTTGAAATGCGACCACTGTTGGTTGTCATGACCATAACCTTGACTTCGACCACGATCGACGGCTCCAGAGGTTTTGTGGTATTTGACCCCACTGTGGGCGTTACTGTAGTAAAAGAGCTGCCGTCGTTCCTCCTGAGCCTCAGTCAGGTACCTCTTCAGATCCATCTGGGCCTGAGGCAGGAACAGGCTCCTCTTGTGGCTGAGCGATGATGTCTTCGGCTGGGGCAGAACCTTCTGGACCCTGGCTCTGTGGGGGGTCTTGCCGTTGGGTATTCGTTTGTACAGGGGGGTACGGTTGTTGGGTTTGCAGCCCTCCTCTTCCAGCCCCTCCGTTCCCTTCTTCTTCCTAGGTTTAGAAAGTGTGGTCCTGGGTTTCTTCACAGGGGTCTTCTTGTGGTTGGGTGGTGCTTGTTCAGAGTTGTAGTTGTACTTGATGGCTGAGACTGGAGTTCCTCTGGGAGGGTTGTTCTCTGAGTGCTGGGAGGGGTGGAAACCCTGCTGCTTGTGACGTGATTGGATGATGAACGCCAACTCGGCAAGTTGAGCCGCCACCTCTTCCTCATCCCTGTTCCTCCCGCTCTTACCCATCGTCCTCTCTATTGTTTCCTTGCTgttcctctccatgtctttccGCTGTCTGAAAGTGCCTTCGCCCCTGTTATGTTGAGAACCAAGGCCTTGGTCTGCTCTCCTGTACAGGTGTTGTCCTGCTCTCTCGGTGCTGTCGTAGGGAAGTCTGTCACAGTCCGAGCTGGCTTCTAGCAGGTCCTGTAGGGACAGGTTGCCAGTGGCTGCGGGGCTACGGGAATGACACTGGATGACATGAGCTTGTCTGGCCACTGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCTGATCACTAGAACTTTGTTGGAGCCCTGGAGAGGGGTGTTTCTATTGGATAAGTGCATGGAAGATGTTGTGGGGTTTTCACCCTGTGCGTTGGTTCTAAAGGGTTCTGGTGAGTTTTGTGGGATAGCTGC
>TU104026
TCAGATAGTTTCTTGGAGGGGGTGTTAAGCAGATTCTTAGTGGGCGTGTCCAGGAACCTGAGGGGCGATTCCAGGAAGCTGTTCACGTTGTGTTTGGTGGGTGTCGACTCCTCCGATAGATCCAAATCGCCATTAGCTGACGTGGACAAGACGGTGACCGGACCGGACCTCTCCACTTTGTAATACCCCTGCTGTTGACCCACAGAGGAGTAGCCATTGGATAAACCATGGTTCAACCCGGTTCTGTGGTTGTTAGAGTCTATGCTGGTGAAACTGGGGATAGTGGAGCTAGCCTTTAGGTTAGCACCGTGCTGCTGCCCAACGTAGGGCTGCGATACCTGAGAATACAATCCTCTTTCACAATCATGTCCttgtccaactccttgtccttgTAAAGGGTCCAGGTGACCGTTGAAATGCGACCACTGTTGGTTGTCATGACCATAACCTTGACTTCGACCACGATCGACGGCTCCAGAGGTTTTGTGGTATTTGACCCCACTGTGGGCGTTACTGTAGTAAAAGAGCTGCCGTCGTTCCTCCTGAGCCTCAGTCAGGTACCTCTTCAGATCCATCTGGGCCTGAGGCAGGAACAGGCTCCTCTTGTGGCTGAGCGATGATGTCTTCGGCTGGGGCAGAACCTTCTGGACCCTGGCTCTGTGGGGGGTCTTGCCGTTGGGTATTCGTTTGTACAGGGGGGTACGGTTGTTGGGTTTGCAGCCCTCCTCTTCCAGCCCCTCCGTTCCCTTCTTCTTCCTAGGTTTAGAAAGTGTGGTCCTGGGTTTCTTCACAGGGGTCTTCTTGTGGTTGGGTGGTGCTTGTTCAGAGTTGTAGTTGTACTTGATGGCTGAGACTGGAGTTCCTCTGGGAGGGTTGTTCTCTGAGTGCTGGGAGGGGTGGAAACCCTGCTGCTTGTGACGTGATTGGATGATGAACGCCAACTCGGCAAGTTGAGCCGCCACCTCTTCCTCATCCCTGTTCCTCCCGCTCTTACCCATCGTCCTCTCTATTGTTTCCTTGCTgttcctctccatgtctttccGCTGTCTGAAAGTGCCTTCGCCCCTGTTATGTTGAGAACCAAGGCCTTGGTCTGCTCTCCTGTACAGGTGTTGTCCTGCTCTCTCGGTGCTGTCGTAGGGAAGTCTGTCACAGTCCGAGCTGGCTTCTAGCAGGTCCTGTAGGGACAGGTTGCCAGTGGCTGCGGGGCTACGGGAATGACACTGGATGACATGAGCTTGTCTGGCCACTGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCTGATCACTAGAACTTTGTTGGAGCCCTGGAGAGGGGTGTTTCTATTGGATAAGTGCATGGAAGATGTTGTGGGGTTTTCACCCTGTGCGTTGGTTCTAAAGGGTTCTGGTGAGTTTTGTGGGATAGCTGC

Function

NR:

description
methylcytosine dioxygenase TET1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104030 False 2310 lncRNA 0.53 1 83778531 83780840
TU104031 False 2410 lncRNA 0.52 1 83778552 83780961
TU104025 False 1245 lncRNA 0.54 1 83779393 83780637
TU104026 True 1448 lncRNA 0.54 1 83779393 83780840

Neighbor

gene id symbol gene type direction distance location
LOC110530770 slc25a16 coding downstream 56617 83713352 ~ 83721914 (-)
LOC110532793 lox5 coding downstream 77075 83676064 ~ 83701456 (-)
LOC110530724 anx11 coding downstream 369231 83386983 ~ 83409300 (-)
LOC110530648 LOC106577192 coding downstream 403908 83272529 ~ 83374623 (-)
LOC100301648 LOC106577193 coding downstream 511368 82949609 ~ 83267163 (-)
LOC110530866 nfu1 coding upstream 45988 83814162 ~ 83851846 (-)
si:ch211-198a12.6 LOC106577248 coding upstream 170096 83951057 ~ 83956958 (-)
LOC110532804 NA coding upstream 185204 83966165 ~ 83967505 (-)
LOC110530927 LOC106577245 coding upstream 250593 84031554 ~ 84104730 (-)
LOC110530947 LOC106577244 coding upstream 316666 84097627 ~ 84110671 (-)
G94355 NA non-coding downstream 18523 83758770 ~ 83760008 (-)
G94352 NA non-coding downstream 22568 83755739 ~ 83755963 (-)
G94351 NA non-coding downstream 22972 83755295 ~ 83755559 (-)
G94342 NA non-coding downstream 37306 83740802 ~ 83741225 (-)
G94341 NA non-coding downstream 37932 83740212 ~ 83740599 (-)
G94367 LOC100846954 non-coding upstream 2143 83783104 ~ 83783392 (-)
G94368 NA non-coding upstream 3132 83784093 ~ 83784416 (-)
G94369 NA non-coding upstream 4407 83785368 ~ 83785715 (-)
G94370 LOC106577185 non-coding upstream 5212 83786173 ~ 83786397 (-)
G94372 NA non-coding upstream 10346 83791307 ~ 83791566 (-)
G94201 NA other downstream 292594 83484056 ~ 83485937 (-)
LOC110532782 LOC106577197 other downstream 1476684 82291777 ~ 82301867 (-)
G92566 NA other downstream 1616788 82160407 ~ 82161743 (-)
LOC110530475 eif4ebp2 other downstream 2161207 81607478 ~ 81629726 (-)
G94613 NA other upstream 20371 83801332 ~ 83802471 (-)
LOC110531033 LOC106577242 other upstream 377862 84157529 ~ 84256949 (-)
G94821 NA other upstream 422526 84203487 ~ 84204464 (-)
LOC110532813 LOC106613040 other upstream 510799 84291760 ~ 84331700 (-)
G95494 NA other upstream 947903 84728864 ~ 84729423 (-)

Expression


Co-expression Network