XLOC_020370 (si:dkey-78l4.6)


Basic Information

Item Value
gene id XLOC_020370
gene name si:dkey-78l4.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19453822 ~ 19455139 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040448
CACTGATAGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCCGACCTTCACTGCTCATGTGGGCATAGTAGATGGCCAGGAGGCAAAACCTCACTCCAGACCTTACATGGTTTCTGTTCAACTGCTCGGTCAAAATATCTGTGGTGGATTCCTCATTTCGGACCAGTTTGTCTTGACTGCTGCACAGTGCTGGCACCAGAATCAGGATTTGACTGTTGTGGTCGGTGCCCATGATTTGAGAAAACGTCAAAATTCCAAGAACTTTATAGTGAAGAGCCACATTACGCATCCAAACTTCAATTCTAAAACGTTTGAGAATGACATCATGCTTTTAAAGCTAAAGGGAAAAGTCCCACTGAACAACAAGATAAGACCAATATCATTACCAAAGAATGGAGAAAGTTTTAAAGCAGATACTCCCTGTAGTGTTGCTGGTTGGGGAAGACTGTGGACTAAAGGCCCAGTGAGTGACCTTCTATTGGAGGCAAAGACAGCTATAGTGAATGATGCAGAGTGTAAACTCAGATGGGGATCTCATTATGTGCCCTCAATGATGATCTGTGCTTTTGGTCATGGTGGATCCTGCAATGGTGATGGAGGAGGTCCTTTGGTTTGTAATAACACTGCTGTTGGAGTCACAATTTTCAGAGACCGTTATCTCTGTAATTCACGCTTGCTTCCTAATGTGTATACTAAGATTTCAGCATATCTTCCATGGATCCGCAGCATAATTGGAAATGTCTAGCGACTCCATGAAAATAAAAACGGATGAAATGTTTTTCTTGAATTCTTCCGTAAATTCTTCAATAAACGTAT

Function

symbol description
si:dkey-78l4.6 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-83 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000071389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040448 True 844 mRNA 0.43 5 19453822 19455139

Neighbor

gene id symbol gene type direction distance location
XLOC_020362 si:dkey-78l4.5 coding upstream 25015 19264181 ~ 19428807 (+)
XLOC_020369 si:dkey-78l4.4 coding upstream 36072 19415080 ~ 19417750 (+)
XLOC_020368 si:dkey-78l4.2 coding upstream 45721 19405517 ~ 19408101 (+)
XLOC_020367 si:dkey-21e2.12 coding upstream 86376 19365220 ~ 19367446 (+)
XLOC_020366 si:dkey-21e2.16 coding upstream 140084 19311411 ~ 19313738 (+)
XLOC_020371 si:dkey-78l4.7 coding downstream 18665 19473804 ~ 19476271 (+)
XLOC_020372 si:dkey-78l4.8 coding downstream 23001 19478140 ~ 19482177 (+)
XLOC_020373 si:dkey-21e2.3 coding downstream 31572 19486711 ~ 19491728 (+)
XLOC_020374 si:dkey-78l4.10 coding downstream 39857 19494996 ~ 19496507 (+)
XLOC_020375 si:dkey-78l4.12 coding downstream 62471 19517610 ~ 19518789 (+)
XLOC_020360 BX927243.1 non-coding upstream 215596 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 857564 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1149534 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1162025 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1629249 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 316559 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 337980 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 384136 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 556657 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 684386 20139525 ~ 20139592 (+)

Expression


Co-expression Network