XLOC_020371 (si:dkey-78l4.7)


Basic Information

Item Value
gene id XLOC_020371
gene name si:dkey-78l4.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19473804 ~ 19476271 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040449
AGAGCCCACTGATAGTCTTTATCATggccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCTGACCTTCAGTGCTCATGTGGGCATAGTGAACGGCACAGAAGCAAAACCTCATTCCAGACCTTACATGGTTTCTCTTCAGAAGGGCTTTCAACATGTCTGTGGTGGATTCCTCATTTCTGAAAAGTTTGTCTTGACCGCTGCACATTGC
>TCONS_00040450
AGAGCCCACTGATAGTCTTTATCATggccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCTGACCTTCAGTGTGAACGGCACAGAAGCAAAACCTCATTCCAGACCTTACATGGTTTCTCTTCAGAAGGGCTTTCAACATGTCTGTGGTGGATTCCTCATTTCTGAAAAGTTTGTCTTGACCGCTGCACATTGCCGAATGGGaaatgagatattaactGCTGTGGTTGGTGCACACAACTTAAGAAATAGGTCGGAAAAGTCGGTCCGTATGAAAGTCAAGTCTTACCACTTGCATCCAGACTTCACTGTTAAACCTTGGCGTAATGATGTTATGCTTTTAAAGCTAGTGAAAAAAGTCCAACTAAACAAGAACGTCAAGATCATTTCCATGTCGAAGCAAGAAAGAGACATCAAGCCAGATTCAGCTTGTGCAGTCGCTGGATGGGAAAAACTGAGCTTTAAAGGGAAAGTGAGCACACAGCTCATGGAAGCAGGTGTGAAGATCATGAACAACACAGAATGTGAAAATAAATGGAAGAAAATATACTTACCTTCACAGATGATCTGCGTCTATGGCCATGGAGGAAGCTGCGGTGGGGATTCAGGAGGTCCTTTGGTTTGTGAAGACACTGCAGTTGGTGTCACATCCTTTGGTGATGCAAGAGTCTGCAATAGTCGTAAACGACCTGAGGTTTATATGAAGATTTCAGAGTTTCTTCCATGGATCGATTCCATAATTGGAAA
>TCONS_00040451
ATggccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCTGACCTTCAGTGCTCATGTGGGCATAGTGAACGGCACAGAAGCAAAACCTCATTCCAGACCTTACATGGTTTCTCTTCAGAAGGGCTTTCAACATGTCTGTGGTGGATTCCTCATTTCTGAAAAGTTTGTCTTGACCGCTGCACATTGCCGAATGGGaaatgagatattaactGCTGTGGTTGGTGCACACAACTTAAGAAATAGGTCGGAAAAGTCGGTCCGTATGAAAGTCAAGTCTTACCACTTGCATCCAGACTTCACTGTTAAACCTTGGCGTAATGATGTTATGCTTTTAAAGCTAGTGAAAAAAGTCCAACTAAACAAGAACGTCAAGATCATTTCCATGTCGAAGCAAGAAAGAGACATCAAGCCAGATTCAGCTTGTGCAGTCGCTGGATGGGAAAAACTGAGCTTTAAAGGGAAAGTGAGCACACAGCTCATGGAAGCAGGTGTGAAGATCATGAACAACACAGAATGTGAAAATAAATGGAAGAAAATATACTTACCTTCACAGATGATCTGCGTCTATGGCCATGGAGGAAGCTGCGGTGGGGATTCAGGAGGTCCTTTGGTTTGTGAAGACACTGCAGTTGGTGTCACATCCTTTGGTGATGCAAGAGTCTGCAATAGTCGTAAACGACCTGAGGTTTATATGAAGATTTCAGAGTTTCTTCCATGGATCGATTCCATAATTGGAAACAAAGGGCGTAATTTGCTTTGA

Function

symbol description
si:dkey-78l4.7 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human GZMM (granzyme M).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-176 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human GZMM (granzyme M).

Ensembl:

ensembl_id ENSDARG00000095355

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040449 False 224 mRNA 0.48 2 19473804 19475155
TCONS_00040450 False 760 mRNA 0.44 5 19473804 19476249
TCONS_00040451 True 774 mRNA 0.44 5 19473827 19476271

Neighbor

gene id symbol gene type direction distance location
XLOC_020370 si:dkey-78l4.6 coding upstream 18665 19453822 ~ 19455139 (+)
XLOC_020362 si:dkey-78l4.5 coding upstream 44997 19264181 ~ 19428807 (+)
XLOC_020369 si:dkey-78l4.4 coding upstream 56054 19415080 ~ 19417750 (+)
XLOC_020368 si:dkey-78l4.2 coding upstream 65703 19405517 ~ 19408101 (+)
XLOC_020367 si:dkey-21e2.12 coding upstream 106358 19365220 ~ 19367446 (+)
XLOC_020372 si:dkey-78l4.8 coding downstream 1869 19478140 ~ 19482177 (+)
XLOC_020373 si:dkey-21e2.3 coding downstream 10440 19486711 ~ 19491728 (+)
XLOC_020374 si:dkey-78l4.10 coding downstream 18725 19494996 ~ 19496507 (+)
XLOC_020375 si:dkey-78l4.12 coding downstream 41339 19517610 ~ 19518789 (+)
XLOC_020376 si:dkey-78l4.13 coding downstream 46711 19522982 ~ 19530681 (+)
XLOC_020360 BX927243.1 non-coding upstream 235578 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 877546 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1169516 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1182007 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1649231 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 295427 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 316848 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 363004 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 535525 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 663254 20139525 ~ 20139592 (+)

Expression


Co-expression Network