XLOC_020372 (si:dkey-78l4.8)


Basic Information

Item Value
gene id XLOC_020372
gene name si:dkey-78l4.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19478140 ~ 19482177 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040452
AGAGCTCACTGAAAGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCTGACCTTCACTGCTCATGTGAGAATAGTGAACGGCAATAGAGCAAAACCTCACTCCAGACCTTACATGGTTTCTATTCAGAAAAACAGTAACCATATCTGTGGTGGGTTTCTCATTACTGAACAGTTTGTGTTGACTGCTGCACATTGCTGGGAAAAAAATGAAAAGCTGACAGTTGTGGTTGGTGCACATGATCTGAAAAAGAATGAAACGGGTTCTGTCCGCATCAATGTGATGTCCTACCACACACCTAAGCAGTATAAAAATACAACTCTCAAGAATGACATCATGCTTTTGAAGctagaGCAAAAAGTCAAACTAAGCAAAGATATTAGTTTGATATCAATACcacagaaaaaagacaaaaaagtgaTCAATGCAGGCACTAGCTGTAGTGTTGCTGGCTGGGGAACAAAGAAGACTAATGGTCCAACCAGTGATTATCTACTGGAGGCAAAAGTGGAAATAATGGAAAACAA
>TCONS_00040453
AGAGCTCACTGAAAGTCTTCATcatgaccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCTGACCTTCACTGTGAACGGCAATAGAGCAAAACCTCACTCCAGACCTTACATGGTTTCTATTCAGAAAAACAGTAACCATATCTGTGGTGGGTTTCTCATTACTGAACAGTTTGTGTTGACTGCTGCACATTGCTGGGAAAAAAATGAAAAGCTGACAGTTGTGGTTGGTGCACATGATCTGAAAAAGAATGAAACGGGTTCTGTCCGCATCAATGTGATGTCCTACCACACACCTAAGCAGTATAAAAATACAACTCTCAAGAATGACATCATGCTTTTGAAGctagaGCAAAAAGTCAAACTAAGCAAAGATATTAGTTTGATATCAATACcacagaaaaaagacaaaaaagtgaTCAATGCAGGCACTAGCTGTAGTGTTGCTGGCTGGGGAACAAAGAAGACTAATGGTCCAACCAGTGATTATCTACTGGAGGCAAAAGTGGAAATAATGGAAAACAAGGGGATTCAGGAGGTCCTTTGGTTTGTGGAAACACTGCTGTTGGTGTCACATCCTTTGGAAATCCTGATGCCTGTAATTCACCTTTGCTTCCTAATGTGTATACTAAGATTTCAGCATATCTTGACTGGATTAAGAAAATAATTCGAAAGTTTAAGTAGATTAAATTTAAAAAGACAGACACGTTTTTACTT

Function

symbol description
si:dkey-78l4.8 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-270 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000093491

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040452 False 553 mRNA 0.41 4 19478140 19481802
TCONS_00040453 True 730 mRNA 0.40 5 19478140 19482177

Neighbor

gene id symbol gene type direction distance location
XLOC_020371 si:dkey-78l4.7 coding upstream 1869 19473804 ~ 19476271 (+)
XLOC_020370 si:dkey-78l4.6 coding upstream 23001 19453822 ~ 19455139 (+)
XLOC_020369 si:dkey-78l4.4 coding upstream 60390 19415080 ~ 19417750 (+)
XLOC_020368 si:dkey-78l4.2 coding upstream 70039 19405517 ~ 19408101 (+)
XLOC_020367 si:dkey-21e2.12 coding upstream 110694 19365220 ~ 19367446 (+)
XLOC_020373 si:dkey-21e2.3 coding downstream 4534 19486711 ~ 19491728 (+)
XLOC_020374 si:dkey-78l4.10 coding downstream 12819 19494996 ~ 19496507 (+)
XLOC_020375 si:dkey-78l4.12 coding downstream 35433 19517610 ~ 19518789 (+)
XLOC_020376 si:dkey-78l4.13 coding downstream 40805 19522982 ~ 19530681 (+)
XLOC_020377 BX936298.3 coding downstream 56449 19538626 ~ 19543805 (+)
XLOC_020360 BX927243.1 non-coding upstream 239914 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 881882 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1173852 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1186343 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1653567 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 289521 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 310942 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 357098 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 529619 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 657348 20139525 ~ 20139592 (+)

Expression


Co-expression Network