XLOC_020373 (si:dkey-21e2.3)


Basic Information

Item Value
gene id XLOC_020373
gene name si:dkey-21e2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19486711 ~ 19491728 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040454
CACTGATTGTCTTCAACATGACCCTCATCACCTTCTTTCTGCTCTTGCTGGTTTCTCTGCTGCCACACCTGACCTTCATGGTAAACGGCAGTGTAGCAAAACCTCACTCCAGACCTTACATGGTTTCTGTTCAGCTGGATGGTCAACATATCTGCGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAATGGAGAAGAAAATCTGACGGTTGTGGTTGGTGCTCACGACTTAAGACAAAGTATGGCTTCAGATCGCATAGAAGTGGAGTCTTACATCCGCCATCCAAGCTATAACTCAAAATTTATTTGGAATGACATCATGGTTTTTAAG
>TCONS_00040455
CACTGATTGTCTTCAACATGACCCTCATCACCTTCTTTCTGCTCTTGCTGGTTTCTCTGCTGCCACACCTGACCTTCATGGCTCATGTGGGTATAGTAAACGGCAGTGTAGCAAAACCTCACTCCAGACCTTACATGGTTTCTGTTCAGCTGGATGGTCAACATATCTGCGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAATGGAAGAAAATCTGACGGTTGTGGTTGGTGCTCACGACTTAAGACAAAGTATGGCTTCAGATCGCATAGAAGTGGAGTCTTACATCCGCCATCCAAGCTATAACTCAAAATTTATTTGGAATGACATCATGGTTTTTAAGCTAAAGGAAAGAGTCACACAAAACAGTTCCGTTGGATGGATCTCAATATCAAAGAAAAATGAACATGTCGATGCAAATACTCTCTGTAGTGTTGCTGG
>TCONS_00040456
GTCTTCAACATGACCCTCATCACCTTCTTTCTGCTCTTGCTGGTTTCTCTGCTGCCACACCTGACCTTCATGGCTCATGTGGGTATAGTAAACGGCAGTGTAGCAAAACCTCACTCCAGACCTTACATGGTTTCTGTTCAGCTGGATGGTCAACATATCTGCGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAATGGAGAAGAAAATCTGACGGTTGTGGTTGGTGCTCACGACTTAAGACAAAGTATGGCTTCAGATCGCATAGAAGTGGAGTCTTACATCCGCCATCCAAGCTATAACTCAAAATTTATTTGGAATGACATCATGGTTTTTAAGCTAAAGGAAAGAGTCACACAAAACAGTTCCGTTGGATGGATCTCAATATCAAAGAAAAATGAACATGTCGATGCAAATACTCTCTGTAGTGTTGCTGGTTGGGGATTACTGACTAATGGCACACTGAGCGATTGTCTAATGGAGGCAAATGTGTATATAATAAGTAACACGGAATGTAAAAGTAAATGGGGACGGCACTTCTCAGTGTCGCAGATGATGTGCACACGTGGACATGGTGGATCCTGCAGATATGACTCAGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGCATCACATCTTTTGGTGACCCTCATCTCTGTAATTCACCAAAACATCCTAATGTGTATACGAATATTTCAGCATACCGTCCATGGATTGACGGCGTAATAAAAATGGGAAATTAG

Function

symbol description
si:dkey-21e2.3 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-618 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000071386

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040454 False 350 mRNA 0.44 3 19486711 19487232
TCONS_00040455 False 461 mRNA 0.43 4 19486711 19491332
TCONS_00040456 True 765 mRNA 0.43 5 19486719 19491728

Neighbor

gene id symbol gene type direction distance location
XLOC_020372 si:dkey-78l4.8 coding upstream 4534 19478140 ~ 19482177 (+)
XLOC_020371 si:dkey-78l4.7 coding upstream 10440 19473804 ~ 19476271 (+)
XLOC_020370 si:dkey-78l4.6 coding upstream 31572 19453822 ~ 19455139 (+)
XLOC_020369 si:dkey-78l4.4 coding upstream 68961 19415080 ~ 19417750 (+)
XLOC_020368 si:dkey-78l4.2 coding upstream 78610 19405517 ~ 19408101 (+)
XLOC_020374 si:dkey-78l4.10 coding downstream 3268 19494996 ~ 19496507 (+)
XLOC_020375 si:dkey-78l4.12 coding downstream 25882 19517610 ~ 19518789 (+)
XLOC_020376 si:dkey-78l4.13 coding downstream 31254 19522982 ~ 19530681 (+)
XLOC_020377 BX936298.3 coding downstream 46898 19538626 ~ 19543805 (+)
XLOC_020378 hsd11b1la coding downstream 61259 19552987 ~ 19562455 (+)
XLOC_020360 BX927243.1 non-coding upstream 248485 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 890453 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1182423 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1194914 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1662138 17824459 ~ 17824573 (+)
XLOC_020380 BX510913.2 non-coding downstream 279970 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 non-coding downstream 301391 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 347547 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 520068 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 647797 20139525 ~ 20139592 (+)

Expression


Co-expression Network