XLOC_020375 (si:dkey-78l4.12)


Basic Information

Item Value
gene id XLOC_020375
gene name si:dkey-78l4.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19517610 ~ 19518789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040459
CTCGTGCGGGTATAGTGAACGGCAGGGAGGCAAAACCTCACTCCAGACCTTACATGGTTTCTGTTCACATGAATGGGGAGCATATCTGTGGTGGATTCCTCATTTCTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAAAAAAGGTGACATTCTGACGGTTGTGGTTGCGGCACATAAATTGAGCGAAAGCAAGATTTCAGACCGCTTTAGAGTAAAGTCTTACATCCCGCATCCAGACTTCAAACTGAAACCTGTTCTGAATGACATCATGCTTTTGAAGCTGAAAGTGAAACTAAACAACAATGTTGGAACAATATCATTACCAATGAATGGAGAAGATGTTAAAGCGGATACTCTCTGTAGTGTTGCTGGCTGGGGAAGTGTATGGAAACTTGGTCCAGCAACTGATCGTCTAATGGAAGCAAACACATTTATAGTAACTAATGCAAAGTGTGATTATAGATGGGGATTTAATTATGAGGCCTCACAGATGATCTGTGCACATGGTCATGGTGGATCCTGCCAGGGGGATTCAGGGGGACCTTTGGTTTGTGGAAACACTGCTGTTGGAATAACATCTTTTGGTAACCCTTTTCGCTGCAATTCATATTTGCTTCCTAATGTCTATACCAAGATTT
>TCONS_00040460
atgaataataaatgtgaTTTTGCATTACAGCTGAAAGTGAAACTAAACAACAATGTTGGAACAATATCATTACCAATGAATGGAGAAGATGTTAAAGCGGATACTCTCTGTAGTGTTGCTGGCTGGGGAAGTGTATGGAAACTTGGTCCAGCAACTGATCGTCTAATGGAAGCAAACACATTTATAGTAACTAATGCAAAGTGTGATTATAGATGGGGATTTAATTATGAGGCCTCACAGATGATCTGTGCACATGGTCATGGTGGATCCTGCCAGGGGGATTCAGGGGGACCTTTGGTTTGTGGAAACACTGCTGTTGGAATAACATCTTTTGGTAACCCTTTTCGCTGCAATTCATATTTGCTTCCTAATGTCTATACCAAGATTTCAGCATATCTTCCATGGATCCACAGTATTATAGACAATTGTGAGTGATTTATGGAAAATGTATAAAAGGTAGAAATGTTTTTCTTGAGTTCTTCCATGAACCAATAAAAGTATCACATGGCATTCAT

Function

symbol description
si:dkey-78l4.12 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-364 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000095175

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040459 False 642 mRNA 0.43 4 19517610 19518662
TCONS_00040460 True 515 mRNA 0.38 2 19518195 19518789

Neighbor

gene id symbol gene type direction distance location
XLOC_020374 si:dkey-78l4.10 coding upstream 21103 19494996 ~ 19496507 (+)
XLOC_020373 si:dkey-21e2.3 coding upstream 25882 19486711 ~ 19491728 (+)
XLOC_020372 si:dkey-78l4.8 coding upstream 35433 19478140 ~ 19482177 (+)
XLOC_020371 si:dkey-78l4.7 coding upstream 41339 19473804 ~ 19476271 (+)
XLOC_020370 si:dkey-78l4.6 coding upstream 62471 19453822 ~ 19455139 (+)
XLOC_020376 si:dkey-78l4.13 coding downstream 4193 19522982 ~ 19530681 (+)
XLOC_020377 BX936298.3 coding downstream 19837 19538626 ~ 19543805 (+)
XLOC_020378 hsd11b1la coding downstream 34198 19552987 ~ 19562455 (+)
XLOC_020379 rgmd coding downstream 121520 19640309 ~ 19646421 (+)
XLOC_020380 BX510913.2 coding downstream 252909 19771698 ~ 19771812 (+)
XLOC_020360 BX927243.1 non-coding upstream 279384 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 921352 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1213322 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1225813 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1693037 17824459 ~ 17824573 (+)
XLOC_020381 BX510913.3 non-coding downstream 274330 19793119 ~ 19793233 (+)
XLOC_020382 NA non-coding downstream 320486 19839275 ~ 19839592 (+)
XLOC_020383 NA non-coding downstream 493007 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 620736 20139525 ~ 20139592 (+)

Expression


Co-expression Network