XLOC_020377 (BX936298.3)


Basic Information

Item Value
gene id XLOC_020377
gene name BX936298.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19538626 ~ 19543805 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040464
ATGACTAAAGCGATCAGCCTGCTGCTCTCAGTGACTCTGATAAGCTTGGCACTGACTGGTGCATTCGGAGCTGATATCATCAATGGCAAAAAGGCTAAGAAGAGCTCTTTGCTGTACATGGCATCAGTGCAGATTAACGGAGAACACAAATGTGGAGGATTTCTGATTGATCCAAGTTACGTGCTCACGGCTGCACACTGCAATAAACAAGGCAATATGAGTGTGATCCTGGGAACCCACGACATCAGTCCAAAAGGGACAAATGTGAAACGTTACAGAGTGCAAAATAAGCATATACATCCATCCTACAAATCTGTAAAAACTGGGAAAGACATCATGCTTCTAAAGCTGTCCAAGAAGGTGAAGATAGGCAAAGATGTAAAACTCGTCACAATCCCGAGCAAGGACAAACCACTGAAACCGAAGTCCAAGTGTCTGGTTGCAGGATGGGGGAAAACTGAAAAAGACAACACTGTGAACGATCTTCTGGTGACAGATGTGTTGACTATCAACAAAACCGTCTGCCAATCAGTGTGGAAAAAAATCAATGTTGAACTGCCTGACAATATCCTCTGTGCTGGAGGCTATGAGACCAAAAGTGGCGCTTGCCAGGGTGATTCAGGTGGGCCGCTGGTGTGCAGTGGACAAGCAGTGGGCATCGTCTCTTTCAACATGGGCCGCTGCGACTACCCCAATACTCCAAATATTTACACTCAGATTTCCAAATACACCCAATGGATTAAAAAGGTGATCCGTGGAGGTTCCTGATGCCTGTGTTAACCTCAcctgtatcaaaataaacttttatggTACCACTTATATGCTACAgattaaacattgtaataaatgtgagaaaacaacaataaaaactcaATGACTTCCTTCTTTTAAAGTGCCACTTCAGAGAGAGTGAAACTGTTCGGGGGGCTGTTTGATTCTCAACCGCAGCTAAAGCACACTGACATCAACCACATCCTAAGTTACAAAACTGTcttgtcttttaaaaatatatgcatgagagaggggggaaaaaaaagcttGAGAGGACactttacacttacaaagtcctgGAGACACAAGCAATCGATTGGTCAGGGTGTATAAAAAGTCTCTATAGCAAAGAATTCCTTTCATCAAAGAACATTTAGCTTACATATTTAAATCTGTCCCTTACGGACAAAAATGATCTTGATGCATGAAGGAACCCATGTTGAaaataacaacagaaaaaaaaagaaaaaaaagaagaaattgcTCCAGAAAGAGCATCTGGTGTGGTGTTGTATTAGTACAAGCTCATATAGGGCCTGATTACTTCACTTCATaacttcattcttttttttttttttttttgtatttgtgaatcCTTGAATTGTGAAAACAGATCCATATACATTTCAACACTTCAAGGCATCTCTGCTAAACAATTATGATTCCGATCTTCAAATCACACGCTATATGCAAATTTAACTAGATTACGTTGACTAAAGCGCCAGACACACCACATGTAGTTAATTAATCTTATTATTTACAGAAGCGTAAACTACTGTATATATCTTATTtgccattttaattattttatgtgcaGGCTATAGCAGGGcccctgcaggattttattccaaggtaCGCACAAATCCAGCCCCGCCCCCTTCCCGCAATGATAAAGAAACATGGATGCTTACTGTCAAAGGCTAcgttatttaagggcattcgGTATGACATAATTCACTTCctttttaattttagtattttgttgaaatctaaatgtaataaagcacatcagcaccaagAGAAAACCAGACGCTTAAGATGTAATCtttaaaattatgacatattaaaaaaatgtgtaaatatatgaCAGAAGATTGTGATACAATACAATTAGTGAAGCACTGATTAAATCCTTACTTTCCACTGACCAAAAATCATCCACCCGCACAGTTGAGTAATTGACGagctcaaataaaaatataatttgttaaattttctttaaaaatatatattttttacatatatagagtctctttgtttaaatatttttcttggtcAACTACcttctaaataaaatagaagaatgaataacatttgaggtgaagtgcttcaaaacaaatCCGCTATATGCTTCAACAATGCCAAATCACTACCTggattgtcaaataaaaaaataatctaccctacataaaattaaagtgagatattcagtttcagagaagcctgtATTGAACTGTTAAATcattaatcaaataatttaaatgagcagGACAGGGATTTACACAGTAGCCTTTTTTGCAACAGCGCTGAACATGTTTCCAAATTACCTCGGTTAAACATACTTGGTTGAAAAGGTGAGAAAACTCAAACTCatgagaatggagatgtctgcttATTTATGCTAGTATGTAAGACAAATTTGTTTAAAACACCTTGAATGGTAgccattaggattagtttttgtcTCAGTAGTtttaggccttttggcaaatgtctcaatgaagtttatttgtttaaagagTATTTACTCATTTTGAgccttgttttaaacaatagctaTCTGAATTGTAATTGTTAGTGTGTGGAAAAAAACACTagcaaaactaaagccaatagatttcCATGCAAGTTcatacactttaaaacacacaaacgcacacttttatttgttgtcattctttcttgctttgtcaATATATCGTAGTGTATatggtttaataatcaatttaaattatgtaaattttttatttttttttaaaaagctacattaaccctctggggtctgagggtgttttggggctctggagaagttttgacatgcactgacattgttgttttcagtatctttaaaacatattaatggctaaagtgtgataacactgtaaacagcacaaattgggctacaataatacttaagcagcatgtttgtatgtgtttgtgtttttgagaaagaaacgttaaTGCGTGGTAGgggaaaaactaaaattttgaagcCACTGAAACAAGGCCGTAAAACACACAGAGACCATTTGTGCACAGGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116690

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040464 True 3033 mRNA 0.36 5 19538626 19543805

Neighbor

gene id symbol gene type direction distance location
XLOC_020376 si:dkey-78l4.13 coding upstream 7945 19522982 ~ 19530681 (+)
XLOC_020375 si:dkey-78l4.12 coding upstream 19837 19517610 ~ 19518789 (+)
XLOC_020374 si:dkey-78l4.10 coding upstream 42119 19494996 ~ 19496507 (+)
XLOC_020373 si:dkey-21e2.3 coding upstream 46898 19486711 ~ 19491728 (+)
XLOC_020372 si:dkey-78l4.8 coding upstream 56449 19478140 ~ 19482177 (+)
XLOC_020378 hsd11b1la coding downstream 9182 19552987 ~ 19562455 (+)
XLOC_020379 rgmd coding downstream 96504 19640309 ~ 19646421 (+)
XLOC_020380 BX510913.2 coding downstream 227893 19771698 ~ 19771812 (+)
XLOC_020381 BX510913.3 coding downstream 249314 19793119 ~ 19793233 (+)
XLOC_020382 NA coding downstream 295470 19839275 ~ 19839592 (+)
XLOC_020360 BX927243.1 non-coding upstream 300400 19237031 ~ 19238226 (+)
XLOC_020351 NA non-coding upstream 942368 18560343 ~ 18596258 (+)
XLOC_020344 NA non-coding upstream 1234338 18243758 ~ 18304288 (+)
XLOC_020345 NA non-coding upstream 1246829 18291474 ~ 18291797 (+)
XLOC_020339 BX908731.2 non-coding upstream 1714053 17824459 ~ 17824573 (+)
XLOC_020383 NA non-coding downstream 467991 20011796 ~ 20050276 (+)
XLOC_020385 BX005203.1 non-coding downstream 595720 20139525 ~ 20139592 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G204506 NA non-coding CI01000048 null 571747 ~ 572993 (+)